NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010237

3300010237: Terrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2



Overview

Basic Information
IMG/M Taxon OID3300010237 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121435 | Gp0154128 | Ga0136250
Sample NameTerrestrial oil reservoir microbial community from Ivishak Formation, Alaska - I2
Sequencing StatusPermanent Draft
Sequencing CenterYale Center for Genome Analysis
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size1260996402
Sequencing Scaffolds6
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
Not Available3
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTerrestrial Oil Reservoir Microbial Communities From Alaska
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationAlaska, USA
CoordinatesLat. (o)70.4Long. (o)-148.7Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004971Metagenome416Y
F024691Metagenome204Y
F041530Metagenome159N
F043719Metagenome155N
F045470Metagenome152N
F059535Metagenome133N
F066220Metagenome127N
F076711Metagenome117Y
F077781Metagenome / Metatranscriptome117N
F079441Metagenome115N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0136250_100000730All Organisms → Viruses → Predicted Viral4242Open in IMG/M
Ga0136250_100001505Not Available2252Open in IMG/M
Ga0136250_100001743All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon1992Open in IMG/M
Ga0136250_100002654All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes1435Open in IMG/M
Ga0136250_100004520Not Available959Open in IMG/M
Ga0136250_100004559Not Available954Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0136250_100000730Ga0136250_1000007301F059535AEFDGFTIQYDEAIGWYDYVETGDTSKYGKDFGYYASLIVRVRNEDGVCRSLLTAIYGKENGKVDITDEGIEALYGIASFVITSIRVKGTAVKIPVKEEERVIVAPTKEIPELSAVVGLIGYIAKNYNMSVDEVIELVRKSFKRK*
Ga0136250_100000730Ga0136250_1000007302F066220MGLFVNVRELSVRELMDLARSNEYSVAYTPFGRFGLRTYIRRAAPWKGLKGDAFWDEAKKHGNLANGLRSAIDISRRFAGNTGVALVKYMDGSYGIMPYKSALQGQGKTIADIIATAPNYFRLITRPEASELIKAAKLQPVVY*
Ga0136250_100000730Ga0136250_1000007306F045470MVFEEFKPVVSPRMNVRVLPDYGFYRVLSVDPVGVLIKDFGKTLAADAESKNNELEEVYMQDNEMAQWRIWVLDPVGIKLKVVGQEKLRGATKYSTSEIRSFSPETNDDDGISQFFSFEDEKIYVDIVNLTKDTLTSQRIKLIGYKYVLEKLDHAPEIYTDIPFGLVR*
Ga0136250_100000730Ga0136250_1000007307F043719MLRNISKFAEFTAAATDTIVHTVSTNRKAVITNIIVTNKESADILVTLYDGASTGEDKKLEIKVATGDTKVISLEDEYGIEFRTSVVAQVDSYTSGSSIWIGGYEA*
Ga0136250_100000730Ga0136250_1000007308F079441MRLESYELVEQLKTLNENIRTLNSILKDWANITNRLDEQIRLLETQRYSSKYWHFEPIEHYDLETLQPGEVVNLLSTTESGAFVLFCSFTTSDKVYWEVRADDLVIKGTIEDLYNYGLIGYNPRTLWISAGNGGYAVWATPNPYIEYRNKIQVYGKNVGDTEIQYNYIIFRYKYIGGD*
Ga0136250_100001505Ga0136250_1000015055F004971MGEEMEIKVGNLSEFEEGWFEALRCLAIQKISEATGEPAKLATGFCNDDEALHLLTASGRVFHVCYSDPLCVFVVEEVRCPRCGQWVPANILEEHLEEHEEFCVWEEEVM*
Ga0136250_100001743Ga0136250_1000017432F024691MRYHTEGQRDKRKLKTHIPLLEIKASKRKSTKHDRVLVILSTLVRNFSERVNVDHVKPPIGLDKTLKLTDERGRKYDIAFIYEGELFLVEVKRCGKWQ*
Ga0136250_100001743Ga0136250_1000017433F041530MAIEKMERKQKGVITKISGKLKNVEFRTRRDGRIELGARRIPKQPLSPAQLSVRQAYGKIYQKWTQLSEEEKAYWNELGKPHKLSGWNVFLRENMKAQTFKVVLDCSGMSTTYENYTLIMFLADFPDLYNALNDDLTNIQVLDSDKTTELQFFRLITKRESTDTVLLINIPSLPPGGYYEIYIKTSMRFNNPGTPGSDFFSFFDDF
Ga0136250_100002654Ga0136250_1000026542F077781PAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*
Ga0136250_100004520Ga0136250_1000045201F076711MGVGWAICPVCGKKFEGSYFPDTGVNTAVHMVQRHMVLRHSKKITDSGIVVAKLPDDYIRASELKTFVAGGTGNTRLQGRAHIVCVCGRYFDITLEEHYDEGKKIEVVVREYDDVGRYKKISERRVVERVGHIDVSKFAELWERAWERIKEDIIREHLMEHGIHL*
Ga0136250_100004520Ga0136250_1000045202F004971MEIKIENLDLFEDGWFEALKCLAIQKISEATGELCRLATGFCNDDEAFHLTAGGRVFHVCYSDPLLVFVVEEVRCPKCGQWVPGNVLEEHLEEHEVM*
Ga0136250_100004559Ga0136250_1000045592F076711MMGIGWATCPVCGKRFEGSYFPDTGVNTAVHMVQRHTILRHGKKITDSGIVDAKLPDDFIRASELKTFVAGGTGNTRLQGRAYIICVCGRYFDITLTEIYDEGKKIEVVVREYDDVGRYKKISERRVVERVGHVDVSKFERLWEQAWERIKEDIIREHLEEHGIHL*
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