NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010054

3300010054: Marine viral communities from Cariaco Basin, Caribbean Sea - 27_WHOI_OMZ



Overview

Basic Information
IMG/M Taxon OID3300010054 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067852 | Gp0122837 | Ga0098069
Sample NameMarine viral communities from Cariaco Basin, Caribbean Sea - 27_WHOI_OMZ
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size101500707
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
Not Available6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCaribbean Sea: Cariaco Basin
CoordinatesLat. (o)10.847Long. (o)-65.114Alt. (m)N/ADepth (m)263
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002667Metagenome539Y
F025299Metagenome / Metatranscriptome202N
F039681Metagenome163Y
F044724Metagenome154N
F052647Metagenome142N
F055665Metagenome138Y
F095307Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0098069_102963All Organisms → Viruses → Predicted Viral3807Open in IMG/M
Ga0098069_110835Not Available1535Open in IMG/M
Ga0098069_111359All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1484Open in IMG/M
Ga0098069_118973Not Available1011Open in IMG/M
Ga0098069_119015All Organisms → Viruses → Predicted Viral1009Open in IMG/M
Ga0098069_129652Not Available717Open in IMG/M
Ga0098069_134146Not Available640Open in IMG/M
Ga0098069_138777Not Available577Open in IMG/M
Ga0098069_145355Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0098069_102963Ga0098069_1029631F052647FMPLIYVSVGLTATYFIGKLILGHMTQLKKVKRGIEVQKEKKSFENGLEDLIDNSPEMYVKVMQELEHLKTNGADEKQMSSLQRKADLLKMVVENQEIINLAGKPLFRVLGKFVGNIGR*
Ga0098069_110835Ga0098069_1108352F044724AGQSYLTKCIIESNSINLLPKVFQVPPILGGLGVFTNSLTPMLDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESVTNMKEKFYDMPTNETNTGTAATSVAGENVTINDGVFLEDIMPTVVSGVVTLSESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHYTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKS*
Ga0098069_111359Ga0098069_1113592F002667MEEVLSASLILVASICAGLSCVFIARNRGSINKHSKQRIKDYESDIKYLGEVKKADAKEYREEILRLKGSINKMKQGTTVTDTDMANSGLGDIIMQLIPNKYRKAASFLVPQVEEAVKKDPAIIERVYEKIKSANTASNKQAQSGSEDQTANTL*
Ga0098069_118973Ga0098069_1189731F039681HDLSLPLLLAQSTNLATLTPSTSSFHQTEHDSALPIDEVLSFISDSDKCELLHNGNDTDFDKTWLIQPDMTAWSYKIALNMGIGLKVSAYTSGNITVDNIHLTITEIGDGAGDTVIADLRIPTGASALSATGEQIIMFHADIMNKIRFNNNKPIKVRLQTESTKSGTATYQVGILPVYPMIPTAVPKEWLLSQVEIHLHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALDEMGTV*
Ga0098069_119015Ga0098069_1190152F044724LTSWDIATSTSIGTGVAQTEINGTQPLTKPTQAQTLIEVVPFMASTGSLTAGQTYLTKCIIESNSINLLPKVFQVPPIMGGLGTFTNSLTPMLDSVECNTPLVLGATQQFRIYGQNFIANTVANRLGLGLHYSESQTTLKEKFYDMPTNETNTGLTATSTVGENLTINDGVFLEDIYPTVVSGVVTASQSYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHFTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKA*
Ga0098069_129652Ga0098069_1296522F095307LTSWDIANPTSIGTGVAKTEINDANPLTKPTQAQTLIEVVPYMSSIAALTAGQSYLTKCIIESNSINLLPKNFLVPPILGGLGTFASSLTPMLDTVECNTPLQLGATQQFRIYGQNFVANTVANKLGLALHYSEAQTSAKEMFYDLPTNETGTGTAATTVAGENFTINDGTFLETITPVVTSGVVT
Ga0098069_134146Ga0098069_1341462F055665KLDQFQSSFFGSLGAASKKLDQATGQATFKALTKDNPMMGFVAEYMMKRGNLGGLVGSESQNTPPKQPQKTDKLGLK*
Ga0098069_138777Ga0098069_1387772F052647LIEPYLPLIYLITGVTASYFSAKLILNHMTSIKKVKRSIDVQKDKKSFENGIEDLIENSPQMYSKVLQELQYLKENGADEKQMASLQRKADLLKMAVDNQEIINLAG
Ga0098069_145355Ga0098069_1453552F025299MIIEDIPFFTEFIVLGIVLGFGYGFTKLFLNHAKDKSRIKRSERKAKEANSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLARKAQQYEMPIRMLGKPILKKVLNLVDKFGV*
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