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Sample 3300009982
3300009982: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_189 metaG
Overview
| Basic Information |
| IMG/M Taxon OID | 3300009982 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0114297 | Gp0127618 | Ga0105147 |
| Sample Name | Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_189 metaG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 33605184 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 4 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin122 | 2 |
| Not Available | 2 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant surface |
| Location Information |
| Location | Austin, Texas |
| Coordinates | Lat. (o) | 30.387 | Long. (o) | -97.7301 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F017083 | Metagenome / Metatranscriptome | 242 | Y |
| F017779 | Metagenome / Metatranscriptome | 238 | Y |
| F064862 | Metagenome / Metatranscriptome | 128 | Y |
| F078624 | Metagenome / Metatranscriptome | 116 | N |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0105147_100087 | Ga0105147_10008721 | F078624 | MKPCIHVRPRDDGQGWAIDVYDGRRAWAKTHLGESPLNKTEAHRLAHKLRDPKFYTARTKRAVNSLTVERGPKAVPHE* |
| Ga0105147_103930 | Ga0105147_1039302 | F064862 | VPAIQVEVSVAANSSNPNIFNGSAFEYSRGRQLLSLGVTAAATGVLITIQSGSDIILEESPAYIATQFPIVPDQMFYNDIMEMFDRLRVVARNSTGGAIVVRGLALLTPL* |
| Ga0105147_106109 | Ga0105147_1061092 | F064862 | MPAIQAEVTVGATSTNNNIISGSAFEYSRGRQLLSLGVTAAATGTFTTIQSGADVILEESATYIATQFPIVPDQMFYNDIMEMFDRLRIQVRNTTAGGIVARALALLTPL* |
| Ga0105147_117678 | Ga0105147_1176781 | F017779 | MNAPEPPHENLHGIFCAFRTILVQSGLFGCLTKLGAQRAELVQKFVPRSRVGIFRNERTQTTPLDPKLTFWCVSYSFGAYG |
| Ga0105147_120930 | Ga0105147_1209302 | F017083 | MQYEIVSKGDRWCSCYTCLPQTVPAAAQTYLKINAAPGTGTGAPPVTQRLLTNTWPKQGTTISIQANTNKN |
