NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009953

3300009953: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 3



Overview

Basic Information
IMG/M Taxon OID3300009953 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0120337 | Gp0151209 | Ga0133737
Sample NameHuman saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 3
Sequencing StatusPermanent Draft
Sequencing CenterAutonomous University of Barcelona
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size4936465
Sequencing Scaffolds6
Novel Protein Genes10
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
Not Available3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationAlicante,Spain
CoordinatesLat. (o)38.3852246Long. (o)-0.5132249Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F049707Metagenome146N
F071329Metagenome122N
F081456Metagenome114N
F095632Metagenome105N
F103430Metagenome101N
F105376Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0133737_10001All Organisms → cellular organisms → Bacteria103319Open in IMG/M
Ga0133737_10004All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes44052Open in IMG/M
Ga0133737_10005All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes43542Open in IMG/M
Ga0133737_10738Not Available1307Open in IMG/M
Ga0133737_11970Not Available804Open in IMG/M
Ga0133737_12763Not Available648Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0133737_10001Ga0133737_10001107F018385MMAELINSWLPYQELSIEKDRDPVTDDEIIYGNHVKHFTLTVYSPEGRVNKYWNARILKDQAGYCRVACPREKKILCFNWVRWTAYMFSHDGMNELVFMPDARRRTVSQLSFDHVPMKEVN*
Ga0133737_10001Ga0133737_10001108F071329MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNSSGIAKILLWFGSVGTGIAASAIVAREVELQFDATIKAVEEARDHIEIED*
Ga0133737_10001Ga0133737_10001114F027205MRAVKESEEFERKALVEARKRDRAEGKPPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0133737_10001Ga0133737_1000196F081456LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE*
Ga0133737_10004Ga0133737_1000410F049707VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTIWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKAS*
Ga0133737_10005Ga0133737_1000529F095632MSFKETTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGRQYAENFAETIDSIKTPSNN*
Ga0133737_10005Ga0133737_100057F049707VVSEYRSPHNDGHDPYILIWEYGTEVQQAEFVERWAEYEPETGWTVWHFRLEDGRVMKFRALEWEQRDDVNHLTTIYFVPKQKENA*
Ga0133737_10738Ga0133737_107381F105376PQFYFMNEKPEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQSQVRRK*
Ga0133737_11970Ga0133737_119701F103430MEQITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLQYPVIGCWRGETEQTAILYLSDEHSKVMNTLNKLKEVLDQKAITY
Ga0133737_12763Ga0133737_127631F105376MNEKPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQSQVKRR*
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