NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009915

3300009915: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, surface; RNA IDBA-UD



Overview

Basic Information
IMG/M Taxon OID3300009915 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116874 | Gp0151164 | Ga0132236
Sample NameAquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, surface; RNA IDBA-UD
Sequencing StatusPermanent Draft
Sequencing CenterMarine Biological Laboratory
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size14176414
Sequencing Scaffolds15
Novel Protein Genes18
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales2
Not Available2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Sar6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → meromictic pond → pond water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationFalmouth, Massachusetts
CoordinatesLat. (o)41.548517Long. (o)-70.622961Alt. (m)N/ADepth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000040Metagenome / Metatranscriptome3998Y
F000103Metatranscriptome2242Y
F000763Metagenome / Metatranscriptome901Y
F000790Metatranscriptome890Y
F001084Metatranscriptome782Y
F001174Metatranscriptome756Y
F002083Metatranscriptome595Y
F002825Metagenome / Metatranscriptome527Y
F005258Metatranscriptome406Y
F005974Metagenome / Metatranscriptome384Y
F007905Metatranscriptome342Y
F036146Metagenome / Metatranscriptome170Y
F039149Metagenome / Metatranscriptome164Y
F046776Metatranscriptome150Y
F067761Metatranscriptome125N
F073587Metatranscriptome120Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0132236_102309All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales712Open in IMG/M
Ga0132236_102360All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales707Open in IMG/M
Ga0132236_102473Not Available696Open in IMG/M
Ga0132236_102557All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales688Open in IMG/M
Ga0132236_103491All Organisms → cellular organisms → Bacteria618Open in IMG/M
Ga0132236_103518All Organisms → cellular organisms → Eukaryota → Sar617Open in IMG/M
Ga0132236_103724All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae605Open in IMG/M
Ga0132236_103989All Organisms → cellular organisms → Eukaryota → Sar591Open in IMG/M
Ga0132236_104109All Organisms → cellular organisms → Eukaryota → Sar584Open in IMG/M
Ga0132236_104153All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage582Open in IMG/M
Ga0132236_104364All Organisms → cellular organisms → Eukaryota → Sar572Open in IMG/M
Ga0132236_105123Not Available539Open in IMG/M
Ga0132236_105781All Organisms → cellular organisms → Eukaryota → Sar516Open in IMG/M
Ga0132236_106076All Organisms → cellular organisms → Eukaryota → Sar507Open in IMG/M
Ga0132236_106222All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0132236_101689Ga0132236_1016891F000103MLMLFLLSGSASAAVSDSESKVTPVQKVIQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEVLKADIQKYTADAALLTKEIAELDEDITIWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFVQVAALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAFDMLMQDLTAQIAQATQDRDEKAETKAKKL
Ga0132236_102309Ga0132236_1023091F002083GLMKAKTKEIDTLTKSIETKIAKIGELGVEVVTMKEDLDDTTKSLADDEAFLRDLEKNCKTKEDEWAIRCKIRAEELLAIADTIKILNDDDALDLFKKTLPSAASFLQMDSSSTIRANALAAIRTAQKSSKFDRHHLDFIALAIQGKKIGFEKVITMIDEMVTTLKTEQVDDDNKKEYCGKELDTADDKKKSLEHSISDLETAIADTKEAIATLKDEIDALETSIKALDKSVAEATE
Ga0132236_102360Ga0132236_1023601F046776LGQTQKQLSEDQKFLRNLGKTCAEADANFEARKKSRLAEIQAVSETIGILTGDEARDAMDTTFSLLQTSSKSDKLRKDAAAVLRKTHSPALSMLASSVELDAFTKVKAMIDKMIKTLKTQQADEVKKNDWCISELQENEMATMKTKDLKADLEAKIGQLESTIKTLSEEIEKAHLDISNLEVALQRASENRKQENLDFQRVVADQMVTAEILNKALDKLATFYDEAAFAQTKKHT
Ga0132236_102473Ga0132236_1024731F000763MNIKNPIILTLGAFLAAWAGSNFDLDYRTVLFAVVAGVFGYATPKK
Ga0132236_102557Ga0132236_1025571F073587VMSQDIEKKLAYMSTQTRGGEGDRPVIGIDTISHELDAAKYDLGELKDMLNSCKGDTAHVKRIVLACERDMEDFTAAMDAVNVDLDEMRARVDSTHSIITSRQRVEATVTAEISTMRLDMGDMQEALKAHDAWMEDVSQSLQEAHERCHQLSEDLAETRDQTQAKLDTKVDVVSWNDMNDDIDASIKTVRDMASALRLEVDSRRRLVDEGMKNVREELRQCDEKHDANH
Ga0132236_103491Ga0132236_1034912F039149MAINSNQLQVAKIYPGNYTNVLRYWHEEKSVVFNNENGTSETLTNQPIGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGLNGSNQAFSSANVIIPSPDFHKDIRSDITDGIKVPAGAYVYRASLRVDGG
Ga0132236_103518Ga0132236_1035181F001084DKKKGLEWDISDLEKAIADETETIATLKSEIEALADGIKKLDAAVAEATETRKEEHEDYVSTLAANTAAKDLLEFAKNRLNKFYNPKLYKPPPKRELSEEDRIVVNMGGTLAPTAAPGGIAGTGIALSQAAAAPPPPPEANLAYKKSGGASNGVIAMVDLLIADLDKDSQIAEVEEKDAQKEYEEFMADSAEKRALDSKAIGDKE
Ga0132236_103724Ga0132236_1037241F007905VVRVAERVGEQFGRFQDHECQQIKAGLMAKEEAGTGRVRLSDFWKDAHDNPDGAWQFGESLNYLRQLGVLDESDSRNPRVMIANYISSPSNCIASSSFYSVCCMDECEALIGHLEKEIAASEAGVERIASVVSNLPSSSVAAPRILSETLLNRLEEIAAVHSGAVQLHGRLFAQWMHHAYPRECPYPHISGTTNPQTPDEW
Ga0132236_103989Ga0132236_1039891F005258LQLAQKRQEDDVVAFLSGTQGENYSPASGQIVGILKTMQDEMEADFAEEKAAEEAAIKAFDELMSAKTKEVNALTKAIEEKMQRAGELAVEIVEMKNDLGDTGAALLDDKKFLADLEKNCKTKADEWEVIVKTRNEELLALADTVKILNDDDALELFKKTLPSTSFMQVEVSSTTLRANALALIRSAQSSAKFDRHH
Ga0132236_104109Ga0132236_1041091F001084SDPRLDFIEMAMHGGKIGFDKIIKMIDGLVADLKKEQDTDDEKKTYCLAELDKSEDKHKGLDLDISDLNKAIADEEESIATLKSEIEALEDGISKLDKAVSEATSTRKAEHDDYVATLAANTAAKDLLEFAKNRLNKFYNPKLYKPSPKRELSEEDRIVVNMGGTLAPTAAPGGIAGTGIGLSQVAPPPPPEAN
Ga0132236_104153Ga0132236_1041532F036146MTPCRTWKITTSEGKTIALGAISPKQAEHFMLAMRPDIRIALIEEIKPL
Ga0132236_104258Ga0132236_1042581F000040ESKVTPVQKVIQLLEGMLEKGKKEKHDEQVQFAAYKQFCDDTSVEKKRAIEEANERIEVLKADIQKYIADAALLTKEIAELDEDITVWKGDIKAATKVREIEKADYDALHKDYSESIDALQRAIAVLKKQAYDRKQASFAQVSALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEML
Ga0132236_104364Ga0132236_1043641F000790SEAKAAEAAAVKTFDELVAAKTKEINSLTTGIETKTSRIGDLAVEIVQMKNDLTDTQAAMLEDKDFLADLEKNCATKSSEWETIVSTRNEELLALAETIKVLNDDDALELFKKTLPGSSASFVQMKTSSATSRERVLAAIRKAQQSSKVVRPQYDFIALAIQGKQMGFEKVIKMIDDMKATLKKEQLDDN
Ga0132236_105040Ga0132236_1050401F067761LDQKVYEKNFQSLEDNVTKLTRGTVKLCQVIGVFPGARMNDGTDEELDVDVELLNWEDCAQNLVGRVEKTWRQLSSQKYKSVLDLVSKKADHSVLRLLQISQHHIESQLDRVRNERELWKEVVDKRAQQPLQLALTLKDPHTGQPLQGPGNFMPGFGALPNGPQMHQQRQMLDSASSVTR
Ga0132236_105123Ga0132236_1051231F002825RSRKMTPSLAEVTSMVLEGHSRLRKQPKGYAGVDGARKLLNDMIFEAMTKYDEEIAKCTEYYSKQCAAMEVCRGQIAAANYIAANSRALILDAQANINRCEVDIPTRKYELKQHLLKCKAELYKMNSRLKIVMGDIAVMTMILEMTDCDKSLLQTQHISLLHCQDPCTKKSFVTFDHKG
Ga0132236_105781Ga0132236_1057811F001174MKSVLFVVACFATTVVVDADQSNPLGKVYELMSALEAKIIKEGEAEAKAFKEFFEWCDDASKNINYDIETGKKSQEKLTAKIAELSSDIEVGTSKIEELAGAIATNEGELKDAQAIRDKEAADFAVSEKELVDTVDTLDRAISIISTEMSKNP
Ga0132236_106076Ga0132236_1060761F001084GFDKITKMIDELMATLKGEQDDDDSKKEYCLAEFDKTEDTKKGLEWDISDIKKAISDGKEAVEQLSSEIEALIAGIKSLDKAVAEATKIRKEEHDEYVSTLAANSAAKELLGFAKNRLNKFYNPKLYKAPPKRELSEEDSIVVSMGGTLAPTTVGGIAGTGISAAQVA
Ga0132236_106222Ga0132236_1062222F005974VRFSLDEFLRGNPLERAQVYEILNRIGAMSVEEIRKEEDLLK*
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Bioinformatics & Integrated Biology Lab
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Biomedical Sciences Research Center "Alexander Fleming"
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