NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009855

3300009855: Hot spring soil microbial communities from Dewar Creek, Kimberly, BC, Canada ? 2012, Sample 2



Overview

Basic Information
IMG/M Taxon OID3300009855 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0120455 | Gp0149105 | Ga0131806
Sample NameHot spring soil microbial communities from Dewar Creek, Kimberly, BC, Canada ? 2012, Sample 2
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Calgary
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size164428300
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria7
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Microbial Communities From Base Mine Lake, Ft. Mcmurray, Alberta, Canada - Surface, May 2015
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Soil → Wastewater Microbial Communities From Base Mine Lake, Ft. Mcmurray, Alberta, Canada - Surface, May 2015

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationKimberly, British Columbia, Canada
CoordinatesLat. (o)49.9543667Long. (o)-116.5155Alt. (m)N/ADepth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001384Metagenome / Metatranscriptome709Y
F003217Metagenome / Metatranscriptome500Y
F004454Metagenome / Metatranscriptome437Y
F018387Metagenome / Metatranscriptome235Y
F029929Metagenome187Y
F035241Metagenome172Y
F045123Metagenome / Metatranscriptome153N
F056639Metagenome / Metatranscriptome137N
F076975Metagenome / Metatranscriptome117N
F093913Metagenome / Metatranscriptome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0131806_1004162All Organisms → cellular organisms → Bacteria5980Open in IMG/M
Ga0131806_1010713All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2525Open in IMG/M
Ga0131806_1012848All Organisms → cellular organisms → Bacteria2084Open in IMG/M
Ga0131806_1014028All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1894Open in IMG/M
Ga0131806_1024758All Organisms → cellular organisms → Bacteria1056Open in IMG/M
Ga0131806_1025023Not Available1045Open in IMG/M
Ga0131806_1025431All Organisms → cellular organisms → Bacteria1029Open in IMG/M
Ga0131806_1036724All Organisms → cellular organisms → Bacteria724Open in IMG/M
Ga0131806_1044243All Organisms → cellular organisms → Bacteria613Open in IMG/M
Ga0131806_1053428All Organisms → cellular organisms → Bacteria526Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0131806_1004162Ga0131806_10041627F003217MGGGNPMSEGGFVVQKVEWFQFRTESGEPFLVMVASLPNGFFTAVPCRVPITHAAHGNMALGSSVDDALRQLQNTLAGKTVEEIFRSE*
Ga0131806_1010713Ga0131806_10107132F004454MDRSRRTVVEVRADLQQRIKQLALLKDQRIYELANAVIEEALADKEKVKALIKRLKLDTWRQHT*
Ga0131806_1012848Ga0131806_10128483F093913VTLVDIDAGEKVTVSASSLQKLFGVVPQEGEVWDYRAARLDEIAEVFRKWQAVQQA*
Ga0131806_1014028Ga0131806_10140284F029929GVERVPIFQQSVDTELYEWLMRELKRRGARSIQEVIRQILREALAEAEKQHG*
Ga0131806_1024758Ga0131806_10247581F035241NTSRPPSFNPRPWISFMARVLQGPEQAQRAYRELLGLEGSSRERAVDFMAQMARGYGLDLTPWFEAILRFHPAPTARAAAAAYLAAEGREDTVLEVLESLRPPLLTMTLLTGLLDALAPRPATPERVARLTAFAQRFNDDEHYTTLYLGDFTGRDVKRLVRRAVAESLLRQHAPEAVSWPRG*
Ga0131806_1025023Ga0131806_10250232F018387VLGAEPPLLEQGSVQFILFGLTVLAIFVGLWISISK*
Ga0131806_1025431Ga0131806_10254311F001384MMTDIRGVGKRITYSEDNPITEWVHNLRKQRDGLKREPRDQAERELLARGLGYRGRDELETIVGSAAYALSHFEMDSEWRYILAEHMQTEAGHGWGYIQQANRIDPSRDHSQPDPAFVEQYGLTPRLEHQALMRRDFLSYLFAGNLWPYGHVTAATIQSILITTPQVLEFEHRVVEAEEREHHDAALQKLHDYVWELIERDGEDYVRKRIAEIDAAALNSRSRTIFDPPRREFLRKYFNTNFENGVKFHEWRV*
Ga0131806_1036724Ga0131806_10367241F076975VGGYHRVGDSNYFGAAPALFCGQRGGNLRAEVIPSYSAADIARPAETVLVVEALSFEYGMTCRLRVPAPKDAVDALSPYYGLNYAPRLLGEYQTRNGYRYREGQGFVVCVDGHARRLRHTERMMIISHRADGTPYYRRQYARE*
Ga0131806_1044243Ga0131806_10442431F045123VRETLTRLGYAEHEDFEYEVEVRLYGNRHLYADVMLFQGDTPLVVVEVEGNARQQREGYEEARLKGAAWNLENPVPLLWVAAGNQDTLYQLQPRDAAIHYALLEGEPPDKLLAPARLLEAIGDYLRRTETEAGREVGQRRPPPPPAGGTAGDLGGAEDLQPANP
Ga0131806_1053428Ga0131806_10534281F056639VSGALLYGVGRIARASAVYGILPALLVATIAQGTVFRGLPTAILLWGYSVCVGALWILCTLATVYGQATRLYGASRDWVRWQNILALAAGLLSASLLAVSVPAPLPAPALTAWVHTTLWWWGFLPPLGIVSGLAVGFHP
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