NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009830

3300009830: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 07 mira



Overview

Basic Information
IMG/M Taxon OID3300009830 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114530 | Gp0149120 | Ga0131845
Sample NameCompost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 07 mira
Sequencing StatusPermanent Draft
Sequencing CenterCenter for Advanced Technologies in Genomics, Sao Paulo University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size74945241
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
Not Available5

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCompost Microbial Communities From Sao Paulo Zoo, Brazil
TypeEngineered
TaxonomyEngineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSao Paulo Zoo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059782Metagenome133Y
F078430Metagenome116N
F088555Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0131845_104884All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2577Open in IMG/M
Ga0131845_107031Not Available2006Open in IMG/M
Ga0131845_117111Not Available1070Open in IMG/M
Ga0131845_127074Not Available811Open in IMG/M
Ga0131845_132203Not Available734Open in IMG/M
Ga0131845_153867Not Available517Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0131845_104884Ga0131845_1048848F059782MRVEFNVARGRAVQGRGSQLAAFSVLLDIESEQLSVMERAELAQRLTARFAQAIAEEFGGEEIEVRRPRE*
Ga0131845_107031Ga0131845_1070312F078430VEGAALMATMLGGVVLPRVYVQESEPDWAGKLIRRWTLRTRPLTWEQYAAIEQMVREVGIARTIERAVDGTPHALGASQVALVLDEGGGRTTTAIVYITAFRVVRPLSLPQRREIELQLEEA*
Ga0131845_117111Ga0131845_1171112F078430VEGAALMATMLGGVVLPRVYVQESEPDWAGKLIRRWTLRTRPLTWEQYAAIEQMVREVGIARSIERAVDGTPHVLGASQVSFVLDEGGGRTTTAMVYITAYRVVRPLSLPQRREIEXQLEEA*
Ga0131845_127074Ga0131845_1270742F088555MAIRMYFDETVSLLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQITALNTDDDVQIHYALDQGGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131845_132203Ga0131845_1322032F059782VLGSDVVRVEFETARGRVIPGTGGQVATFFVALEIWSEQLTGPERAELTHRLSTRIMEAIAEEYGGEEIEIRRSRE*
Ga0131845_153867Ga0131845_1538671F078430MLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQMVRTVGVARTIERAVDGTPHVVGASQVALVLDEGGGRVTTAHVYITSFRVSRPLSLPDRREVELELEEA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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