Sample 3300009598

Overview

Basic Information
IMG/M Taxon OID	3300009598 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0127782 \| Ga0105154
Sample Name	Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_matched
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	214188096
Sequencing Scaffolds	16
Novel Protein Genes	16
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3
Not Available	4
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	5
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Nevada, Gerlach, Sandy's Spring West
Coordinates	Lat. (^o)	40.653	Long. (^o)	-119.3749	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F064214	Metagenome	129	Y
F074155	Metagenome	120	Y
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F089858	Metagenome	108	Y
F091324	Metagenome / Metatranscriptome	107	Y
F103293	Metagenome	101	Y
F104050	Metagenome	101	Y
F104374	Metagenome / Metatranscriptome	100	Y

Family

Category

Number of Sequences

3D Structure?

F064214

Metagenome

129

F074155

Metagenome

120

F080678

Metagenome

115

F084856

Metagenome / Metatranscriptome

112

F089858

Metagenome

108

F091324

Metagenome / Metatranscriptome

107

F103293

Metagenome

101

F104050

Metagenome

101

F104374

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105154_1001940	All Organisms → cellular organisms → Archaea	7729	Open in IMG/M
Ga0105154_1005737	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3683	Open in IMG/M
Ga0105154_1007817	Not Available	2915	Open in IMG/M
Ga0105154_1009830	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2423	Open in IMG/M
Ga0105154_1010559	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	2286	Open in IMG/M
Ga0105154_1014983	Not Available	1709	Open in IMG/M
Ga0105154_1015619	All Organisms → cellular organisms → Archaea	1653	Open in IMG/M
Ga0105154_1019685	Not Available	1363	Open in IMG/M
Ga0105154_1020090	All Organisms → cellular organisms → Archaea	1339	Open in IMG/M
Ga0105154_1024625	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	1126	Open in IMG/M
Ga0105154_1031976	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	902	Open in IMG/M
Ga0105154_1032238	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	896	Open in IMG/M
Ga0105154_1039701	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	757	Open in IMG/M
Ga0105154_1041672	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon	728	Open in IMG/M
Ga0105154_1058068	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	564	Open in IMG/M
Ga0105154_1063943	Not Available	524	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0105154_1001940

All Organisms → cellular organisms → Archaea

7729

Open in IMG/M

Ga0105154_1005737

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

3683

Open in IMG/M

Ga0105154_1007817

Not Available

2915

Open in IMG/M

Ga0105154_1009830

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

2423

Open in IMG/M

Ga0105154_1010559

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon

2286

Open in IMG/M

Ga0105154_1014983

Not Available

1709

Open in IMG/M

Ga0105154_1015619

All Organisms → cellular organisms → Archaea

1653

Open in IMG/M

Ga0105154_1019685

Not Available

1363

Open in IMG/M

Ga0105154_1020090

All Organisms → cellular organisms → Archaea

1339

Open in IMG/M

Ga0105154_1024625

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon

1126

Open in IMG/M

Ga0105154_1031976

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

902

Open in IMG/M

Ga0105154_1032238

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon

896

Open in IMG/M

Ga0105154_1039701

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon

757

Open in IMG/M

Ga0105154_1041672

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon

728

Open in IMG/M

Ga0105154_1058068

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon

564

Open in IMG/M

Ga0105154_1063943

Not Available

524

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0105154_1001940	Ga0105154_100194011	F103293	MAVAAEPLNLEAVEWLTPPYEIFEFQPCQPAVFHVVGYKIGKIRIAPRWPGAPPQKLVLAIRLYVTPESKPMFPHYWDITPARLVHQLAAMLVRGIPPGMRLRIHRDIPGPKAHFSVEWVP*
Ga0105154_1005737	Ga0105154_10057374	F104374	MELSARELGMLKLMVDFFAEKPELTAKIESYTTAHYALLTTYSENFGIPIEDSLKVFEELQKKITEAEYVHVKAPEPIRKLLPLTTEELN
Ga0105154_1007817	Ga0105154_10078171	F084856	MSCTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGYYQKKFQPSDFQCLETYDGVELVPVDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQPSKAHKK*
Ga0105154_1009830	Ga0105154_10098302	F091324	MSIHLHTTITKKANDILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKINEQTKLREALDLTSISRRNLDSLLEIALGNKTIEDFVKEQKADAKNTIETLKSSISWKPPSNFKEFLMVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPVIVAFHVATILEGIGVYFDMRVMGEDIAVKMVRPEIYPLRRKEFGEFF*
Ga0105154_1010559	Ga0105154_10105591	F089858	MEWVEYLVRLRFHVDGFYPEKLTKEYVEREIKKRLSIPELEKEGLMEIIVSEEGADGLLNIPVKRGEIWVEELDDGRFAINLDDPDDPKITCAEVQAVHEDLEEETIKAKDVKYVIIGDIPDMGKARLVRVR
Ga0105154_1014983	Ga0105154_10149834	F080678	MFGRVVNAQTTPISQVYDSWQSIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPNLRGMTARRFVQKLRRLGVGWSWNGDAVRRSVLLAVGYRLLEIEEFEHNRIFGRKEEVSVNV*
Ga0105154_1015619	Ga0105154_10156192	F089858	MEWVEYLVRLRFHVNGFYPEKLTKEYVEREVRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND*
Ga0105154_1019685	Ga0105154_10196851	F080678	MMRKVDAQTTTIERAYDNWERIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPFLRGMTARRFVQKLRRLGVTWNNDVMRRSILLAVGYRLLEIEEFEHYRIFGRKEVSVNV*
Ga0105154_1020090	Ga0105154_10200902	F089858	MEWVEYLVRLRFHVDGFYPERLTREYVEREARRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCVEVQVMREDLEEEAIKAKDVKYVIIGS*
Ga0105154_1024625	Ga0105154_10246252	F089858	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPELEEEGLMEIIVSKKGFDGLLNIPVKRGELWVEELDDGRFTINLDDPDDPKITCVEVQVVREDLEEETIKAKDVKYVILGDIPDMGRARFVRIREGVREVEEE*
Ga0105154_1031976	Ga0105154_10319761	F074155	VAANLLSFDFIRGRLSAEQLEDLAVSLGICLECGGNLVFRDYELVCSQCGVVWGVENTADYVPFPEYESADGGEGSRFEGHWQPCNTLAFLKGLGDPALANSRGKALMRVLAKSPNGAADLGLRARQVKTLIEWEDPPQLRKVLSRISLLLTQMGQRENWLLANYAGNLARKIVAFKLLTKQPISHKLGDAIIAHTIEKFGLKTAASDLKVETEDLQLIRQLENMAQKPKRPKPAYQASSSINSN*
Ga0105154_1032238	Ga0105154_10322384	F089858	DGFYPEKLTKEYVEREVRRKLSVPELEEEGLMEIIISKKGFDGLLNIPVKRGELWVEELEDGRFAINLDDPDDPKITCAEVQVVHEDLEEETIKTKDVKYVIIGDIPGMGRARFVRIRKGVREIEEEGE*
Ga0105154_1039701	Ga0105154_10397011	F089858	RLTREYVEREVRRKLSIPEFEESGLMEIIISKVGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCVEVQVVHEDLEEEAIKVKGVKYAILGDIPDMGKARLVRVRRGVREVEEE*
Ga0105154_1041672	Ga0105154_10416723	F104050	VKSEVSEEHKCIIRLRKYCVVYDTLTQEEKDKYGSKDYVITYCALCIKTYYAKAKMKLVNKYSVVNTL*
Ga0105154_1058068	Ga0105154_10580682	F089858	HVDGFYPEKLTKEYVEREVRRKLSIPELEEEGLMEIIVSETGVDGLLNIPVKRGEIWIKELEDGRFAINLDGPDDPKITCVEVQAVHEDLEEETIKAKGVKYVIIGDIPDMGRARFVRIREGVREVEEGE*
Ga0105154_1063943	Ga0105154_10639432	F064214	VTGRSDFKVLVRSAEGLAYALRDTLDVLADHERRIRLIEERLGLVEGLEARVFRKAVVEGV*

Scaffold ID

Protein ID

Family

Sequence

Ga0105154_1001940

Ga0105154_100194011

F103293

MAVAAEPLNLEAVEWLTPPYEIFEFQPCQPAVFHVVGYKIGKIRIAPRWPGAPPQKLVLAIRLYVTPESKPMFPHYWDITPARLVHQLAAMLVRGIPPGMRLRIHRDIPGPKAHFSVEWVP*

Ga0105154_1005737

Ga0105154_10057374

F104374

MELSARELGMLKLMVDFFAEKPELTAKIESYTTAHYALLTTYSENFGIPIEDSLKVFEELQKKITEAEYVHVKAPEPIRKLLPLTTEELN

Ga0105154_1007817

Ga0105154_10078171

F084856

MSCTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGYYQKKFQPSDFQCLETYDGVELVPVDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQPSKAHKK*

Ga0105154_1009830

Ga0105154_10098302

F091324

MSIHLHTTITKKANDILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKINEQTKLREALDLTSISRRNLDSLLEIALGNKTIEDFVKEQKADAKNTIETLKSSISWKPPSNFKEFLMVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPVIVAFHVATILEGIGVYFDMRVMGEDIAVKMVRPEIYPLRRKEFGEFF*

Ga0105154_1010559

Ga0105154_10105591

F089858

MEWVEYLVRLRFHVDGFYPEKLTKEYVEREIKKRLSIPELEKEGLMEIIVSEEGADGLLNIPVKRGEIWVEELDDGRFAINLDDPDDPKITCAEVQAVHEDLEEETIKAKDVKYVIIGDIPDMGKARLVRVR

Ga0105154_1014983

Ga0105154_10149834

F080678

MFGRVVNAQTTPISQVYDSWQSIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPNLRGMTARRFVQKLRRLGVGWSWNGDAVRRSVLLAVGYRLLEIEEFEHNRIFGRKEEVSVNV*

Ga0105154_1015619

Ga0105154_10156192

F089858

MEWVEYLVRLRFHVNGFYPEKLTKEYVEREVRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND*

Ga0105154_1019685

Ga0105154_10196851

F080678

MMRKVDAQTTTIERAYDNWERIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPFLRGMTARRFVQKLRRLGVTWNNDVMRRSILLAVGYRLLEIEEFEHYRIFGRKEVSVNV*

Ga0105154_1020090

Ga0105154_10200902

F089858

MEWVEYLVRLRFHVDGFYPERLTREYVEREARRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCVEVQVMREDLEEEAIKAKDVKYVIIGS*

Ga0105154_1024625

Ga0105154_10246252

F089858

MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPELEEEGLMEIIVSKKGFDGLLNIPVKRGELWVEELDDGRFTINLDDPDDPKITCVEVQVVREDLEEETIKAKDVKYVILGDIPDMGRARFVRIREGVREVEEE*

Ga0105154_1031976

Ga0105154_10319761

F074155

VAANLLSFDFIRGRLSAEQLEDLAVSLGICLECGGNLVFRDYELVCSQCGVVWGVENTADYVPFPEYESADGGEGSRFEGHWQPCNTLAFLKGLGDPALANSRGKALMRVLAKSPNGAADLGLRARQVKTLIEWEDPPQLRKVLSRISLLLTQMGQRENWLLANYAGNLARKIVAFKLLTKQPISHKLGDAIIAHTIEKFGLKTAASDLKVETEDLQLIRQLENMAQKPKRPKPAYQASSSINSN*

Ga0105154_1032238

Ga0105154_10322384

F089858

DGFYPEKLTKEYVEREVRRKLSVPELEEEGLMEIIISKKGFDGLLNIPVKRGELWVEELEDGRFAINLDDPDDPKITCAEVQVVHEDLEEETIKTKDVKYVIIGDIPGMGRARFVRIRKGVREIEEEGE*

Ga0105154_1039701

Ga0105154_10397011

F089858

RLTREYVEREVRRKLSIPEFEESGLMEIIISKVGVDGLLNIPVKRGEIWIKELDDGRFAINLDDPDDPKITCVEVQVVHEDLEEEAIKVKGVKYAILGDIPDMGKARLVRVRRGVREVEEE*

Ga0105154_1041672

Ga0105154_10416723

F104050

VKSEVSEEHKCIIRLRKYCVVYDTLTQEEKDKYGSKDYVITYCALCIKTYYAKAKMKLVNKYSVVNTL*

Ga0105154_1058068

Ga0105154_10580682

F089858

HVDGFYPEKLTKEYVEREVRRKLSIPELEEEGLMEIIVSETGVDGLLNIPVKRGEIWIKELEDGRFAINLDGPDDPKITCVEVQAVHEDLEEETIKAKGVKYVIIGDIPDMGRARFVRIREGVREVEEGE*

Ga0105154_1063943

Ga0105154_10639432

F064214

VTGRSDFKVLVRSAEGLAYALRDTLDVLADHERRIRLIEERLGLVEGLEARVFRKAVVEGV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009598: Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_matched

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences