| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009572 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0120383 | Gp0147222 | Ga0130020 |
| Sample Name | Marine microbial communities associated with Trichodesmium colonies (puff morphology) from Station ALOHA, North Pacific Subtropical Gyre ? SampleE20 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Oregon State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 467673615 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 10 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 8 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities Associated With Trichodesmium Colonies (Puff Morphology) From Station Aloha, North Pacific Subtropical Gyre |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Pelagic → Unclassified → Marine → Marine Microbial Communities Associated With Trichodesmium Colonies (Puff Morphology) From Station Aloha, North Pacific Subtropical Gyre |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | North Pacific Subtropical Gyre | |||||||
| Coordinates | Lat. (o) | 22.0 | Long. (o) | -158.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002093 | Metagenome / Metatranscriptome | 594 | Y |
| F002490 | Metagenome / Metatranscriptome | 554 | Y |
| F004764 | Metagenome / Metatranscriptome | 424 | Y |
| F004772 | Metagenome / Metatranscriptome | 424 | N |
| F015102 | Metagenome / Metatranscriptome | 257 | Y |
| F067104 | Metagenome / Metatranscriptome | 126 | Y |
| F072421 | Metagenome | 121 | Y |
| F090509 | Metagenome | 108 | Y |
| F097234 | Metagenome | 104 | N |
| F101343 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0130020_10045284 | Not Available | 517 | Open in IMG/M |
| Ga0130020_10127517 | Not Available | 525 | Open in IMG/M |
| Ga0130020_10224885 | Not Available | 686 | Open in IMG/M |
| Ga0130020_10459111 | Not Available | 656 | Open in IMG/M |
| Ga0130020_10640514 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | 564 | Open in IMG/M |
| Ga0130020_10774103 | Not Available | 517 | Open in IMG/M |
| Ga0130020_10799316 | Not Available | 505 | Open in IMG/M |
| Ga0130020_10821542 | Not Available | 826 | Open in IMG/M |
| Ga0130020_11043553 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus | 519 | Open in IMG/M |
| Ga0130020_11217298 | Not Available | 680 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0130020_10045284 | Ga0130020_100452842 | F002093 | MAYTGSIPAGGPGNFLTPDRATEQEGVAVDFITVDFISDVSGEITHPLASANTAGLQLAMEAIQHQGVNILGTGNLSNSDTEQTYMVRRDALDTISSTTTVAAIQTAIRALDGLTPDKV |
| Ga0130020_10127517 | Ga0130020_101275172 | F067104 | MKLTKETLREIIKEVIAETDAHPQIIKKNKEVAHN* |
| Ga0130020_10224885 | Ga0130020_102248851 | F002490 | LKEVKKEIKEYVRDHYKYYGWYPYDVQVGDVLYSYEEYMDILSMTL* |
| Ga0130020_10459111 | Ga0130020_104591112 | F072421 | MNDLIESLIHQFKKQRIIRGNIYDNFMFFSYKTLGADK |
| Ga0130020_10640514 | Ga0130020_106405142 | F101343 | MKSLLIKIGIGVSLGVNLFVFSALLYNLKMYDKRVDENRKFIKDTIIEEVYKQIKFVMPKQSGGVVK* |
| Ga0130020_10774103 | Ga0130020_107741031 | F015102 | LSTKISNQDGDDYAEDKNAPFDDVTHWVGNLPSKDTDSTKRVTQRSTWRKIKSNILSKELGMETKRKD* |
| Ga0130020_10799316 | Ga0130020_107993162 | F004772 | MTKNFKIAQNVSSDGEIITGFRYIDTNLTLGDEGTGSDPTPSTNRILAIHTYSTLAGEIVITGSKQITNKTAKGTAIRYRVAAADANDQYIGDMGVGVHGILSVANSGTGTMTPTITLYVG* |
| Ga0130020_10821542 | Ga0130020_108215422 | F097234 | MTELFLGFAALVFVEQNKEFIHQARENKRAGYVWELDPGFVSKDALAIAFEGNGERTVMWRQKKVVEVRIPLRKPKEMK* |
| Ga0130020_11043553 | Ga0130020_110435534 | F004764 | MNFSLEQNVDILSAYHVERFTHLRDNEQYQDADAIAQEYICNGEVEDDNYQWLYVN |
| Ga0130020_11217298 | Ga0130020_112172981 | F090509 | MQLLSRREYNLILRSLDKYELYMNSKEKQLSEDLQDKLYYNLYNPKDGIAQTDTEDNVIRSLNFTS* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |