Sample 3300009350

Basic Information
IMG/M Taxon OID	3300009350 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117984 \| Gp0126421 \| Ga0103832
Sample Name	Microbial communities of water from the North Atlantic ocean - ACM35
Sequencing Status	Permanent Draft
Sequencing Center	University of Georgia
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300009350 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117984 | Gp0126421 | Ga0103832

Sample Name

Microbial communities of water from the North Atlantic ocean - ACM35

Sequencing Status

Permanent Draft

Sequencing Center

University of Georgia

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	48631543
Sequencing Scaffolds	20
Novel Protein Genes	26
Associated Families	23

Dataset Contents

Total Genome Size

48631543

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Sar	1
Not Available	5
All Organisms → cellular organisms → Eukaryota	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata

All Organisms → cellular organisms → Eukaryota → Sar

Not Available

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta

Ecosystem Assignment (GOLD)
Name	Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Ecosystem Assignment (GOLD)

Name

Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → surface water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	North Pacific Ocean
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

North Pacific Ocean

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000070	Metagenome / Metatranscriptome	2710	N
F000491	Metatranscriptome	1079	Y
F002457	Metagenome / Metatranscriptome	557	Y
F002556	Metagenome / Metatranscriptome	548	Y
F003081	Metagenome / Metatranscriptome	508	Y
F003808	Metatranscriptome	467	Y
F005505	Metagenome / Metatranscriptome	398	Y
F006501	Metagenome / Metatranscriptome	371	N
F009426	Metagenome / Metatranscriptome	318	Y
F011139	Metagenome / Metatranscriptome	294	Y
F014625	Metatranscriptome	261	Y
F018667	Metatranscriptome	233	Y
F019484	Metagenome / Metatranscriptome	229	Y
F020014	Metagenome / Metatranscriptome	226	Y
F023858	Metatranscriptome	208	Y
F024323	Metagenome / Metatranscriptome	206	Y
F035177	Metatranscriptome	172	Y
F040511	Metatranscriptome	161	Y
F040635	Metagenome / Metatranscriptome	161	Y
F047469	Metatranscriptome	149	Y
F048725	Metatranscriptome	147	Y
F071939	Metatranscriptome	121	N
F074356	Metatranscriptome	119	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103832_1000289	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1481	Open in IMG/M
Ga0103832_1000373	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	1357	Open in IMG/M
Ga0103832_1000489	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	1230	Open in IMG/M
Ga0103832_1000528	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1202	Open in IMG/M
Ga0103832_1000559	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	1178	Open in IMG/M
Ga0103832_1000737	All Organisms → cellular organisms → Eukaryota → Sar	1087	Open in IMG/M
Ga0103832_1000827	Not Available	1044	Open in IMG/M
Ga0103832_1001365	Not Available	872	Open in IMG/M
Ga0103832_1001539	All Organisms → cellular organisms → Eukaryota	840	Open in IMG/M
Ga0103832_1001960	All Organisms → cellular organisms → Eukaryota	770	Open in IMG/M
Ga0103832_1002042	All Organisms → cellular organisms → Eukaryota	760	Open in IMG/M
Ga0103832_1002893	Not Available	672	Open in IMG/M
Ga0103832_1003436	Not Available	632	Open in IMG/M
Ga0103832_1004091	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	595	Open in IMG/M
Ga0103832_1005136	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans	550	Open in IMG/M
Ga0103832_1005139	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	550	Open in IMG/M
Ga0103832_1005224	All Organisms → cellular organisms → Eukaryota	547	Open in IMG/M
Ga0103832_1005804	All Organisms → cellular organisms → Eukaryota	527	Open in IMG/M
Ga0103832_1005863	All Organisms → cellular organisms → Eukaryota	525	Open in IMG/M
Ga0103832_1006330	Not Available	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103832_1000289	Ga0103832_10002892	F005505	LDEIRFYGVAPHYFRPYMGILVISPTHYEGLMRMGLFLGSLACLPLIYNVYNTFNKYVSTIPMQNSILQTTTFTLFMMSLYCANSMLPCGRYYYEPEGGYVGNPVKFSYQYMYLYLCLLHHLDLIDHYIFQFSQTFLRKINPNLLKSASGKKTNY
Ga0103832_1000289	Ga0103832_10002893	F003081	MPEPGLVIELREEMFNDTRFGSEVFYMHVRGVDTLMLLSYIHILKKIFLKNYVTAESDG*
Ga0103832_1000373	Ga0103832_10003732	F003808	MSPAVEEPGLSLFCFAVYTKNTGSPKPSQELELFRMQRENSWSLFSCAEWAVYSDVVEDLGGGVKTIEVRDVKGDFNILKRKETGCWVNTGMFVQVWSAIRDAGHATNHNWVIKVDADAVFFPSKLVRALSDYTVPQEGVYMENCKYVDWGYFGNLEVFSKQAFITLVDNLETCYTSIPWKDGVLGGKYGPMGEDLFAQKCMDMLGVGRQENWMLTTDGACQADRPEEEKHNKKYVPPCEGVSTPTIHPYKKPEMYRTCWQQAVDA*
Ga0103832_1000489	Ga0103832_10004891	F018667	MEISRTANTDVDEMSDSLVMQTEVPRSHSTQKLLGAMAASLLVGAFAGSRLAYHEQPLVSASGDLQELAQIIAKPKRGECSSVKEDCASTGCCDIVGYTCFQTKPGAAKCMKTCTPSATQLCTQPQSIMEPVLQDAVPVGTSMYCFEVYTKDTGTTKKSEELETIQYQYSKGLSIFACDAQDVFADVEVEVGPGLSTISVVDAENDFHFAKRKETGAWVNTGMFTQVWRAIAIGGKYQSADWVVKVDADAVFVPSRLRSKLGAQLVPPSGIYLENCKYVEYGYFGNLEVFSQAAWSTLVDKIDDCKADSQINWKVGVHDGKYGPMGEDLFAQACLDKFGVRRVEAFDITTDGACPADRPIDQQKNKKWKPTCAWTATPAMHPFKKVADWIQCHDATV
Ga0103832_1000528	Ga0103832_10005282	F011139	MGLFLGSLAFLPLIYNAYNSFNRYVSTIPMQNSILQTTMFILFMLSLFCANSMLPCGRYYYEPEGGYVGNP*
Ga0103832_1000559	Ga0103832_10005591	F003808	MKKVVASPGGSLFCFSCYTANTGSEKPSHELELLQMQHENAWNIFSCAEWAVYSDVVAPLGGGDMTIKVDDVKGDFHFAKRKEAKTWINTGMFVQIWTALRDAGHATNHDWVIKADADAVFFPWKLVDALRSATVPVEGLYMENCKFVEWGYFGNLEVFSKQAFTTLVNNLDTCYTSLPWKVGVHGGKHGPMGEDLFAQKCMDLMGVAKQENFGLTTDGACEADRPEGQKKNKKFVPTCAGVSTPSIHPFKKPEAYRECWAQAASVQP*
Ga0103832_1000737	Ga0103832_10007372	F040635	VRHEDIPETNNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKER
Ga0103832_1000827	Ga0103832_10008272	F074356	FSPKMAPQCEFGEDVFGAYEAIIGETVIGLWVMSTWSWRITLEIPSFRSGKAKNLVQEYALYAKQLGYDPITFATIVGWMNGIVAAGLVWAIVNPNFQLQSTCGGVMLLLTGFSIYCRRAVGDGWEKCYDAIVLFLMALAITVSSATALSKGCYAYAINGVDHGFRLSCGYTVVSAIVFWGIKSLQAGDLTEWEKFLDAEDEAPAEPTLGEFFFGASKKTDQEEALLA*
Ga0103832_1001365	Ga0103832_10013651	F006501	KIASDDIKARLDAIKECEQKSREQDKGVQEDIARKVHAVRVIHSDCRDKELGLTKDANEKCQFLDFLTEPAALPKESADKKTKLAYGETMMGYWCNKDEQFKACAAATDALEPVVKECNKKQTQFESEFCAMAIVYHAQCQDLNDVCYTETRAAYDSSVASTSKLLGKWKIEYQALKKINCFLDVWMENGDANTVSSEKLAACKATEADASILNIDFGTPVKEFVCADAGFGTLPDYPGTPDFVTKEYGAWPDLVQDVIHCHIEDPVAVSTTLGANHPDWEHGDHSDPFA
Ga0103832_1001539	Ga0103832_10015391	F000491	GAKEAAEPGSSKAKRELYGFLALSFGDVDTDKDGLINAEQFDQLLAEVAALPRRYGLAPLDVGDAVSRAVNHKILFDTLDTKNGPARGVLGLDQFIEWAYDHVVTHVPKVPAKDVGLYHVEDYSEEEYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLSRAATVPRHFGLAPPESSTEARKKMFDELELKRGGKGTGYVTARTFWEWTVVHVRGMIELQKAGKGWRENH*
Ga0103832_1001960	Ga0103832_10019601	F035177	PHLAQAWTAESSGDGLPGQVGSESYYVSADKKFKAHKFEYPEQSCTKISLHDPTQLHHIAGGERNYYVGCDSVNCCYSDFQMKSWDIEKSGLFNKVEFVGYEDTTELNDNPVTGAEHWRQATKIPFANVSVGYDYFLHRTDAGDVISHRIDYTADGAQIPGGSILYGDFEVQHDIDTFKQVFTPPAECLKSNVLKCPNQKVSSWEAQFFTRDMASMLV*
Ga0103832_1002042	Ga0103832_10020421	F002556	HLITKVATIDIHADVDYYHIEQYGEHQYLTHLEEAVTNPNSRAHASLYEFLLAIFTECDTRSTGVLTFAEFDQLLSRAAEVPRTFGLAPPEASKETRKKFFDSMEDKQMGGVTFRLLLAWTIEHSKGKIAAQKAGKGYKK*
Ga0103832_1002893	Ga0103832_10028931	F019484	IFYFLTILGGSLKKIAKKITISVPISKRVYTNASIF*
Ga0103832_1003436	Ga0103832_10034362	F040511	MFAGSKSNPYNGAAYLYNADETKCCKTQPKGFGAEKLSVAQGNFYNTLEYVDERDFNGVYYQGKAKYYKLTGVNEPVREFWYFTDQDGKPVQQGEAGTGPTDQGYPTSIGHTIWHDYDQSTFDTSAIDSSVFAVPEACKTTTLKCNFP*
Ga0103832_1004091	Ga0103832_10040911	F003081	ELREEMFNDTRYGAEVYYMHVRGVDTLMVLSYVHILKKIFLKNYVTAESDG*
Ga0103832_1004379	Ga0103832_10043791	F047469	KTMKASAMKAMKAKTMKASAMKAMKVSVIAKGPRAKAVVFLGLGNKSKTLSGLKKSDLMKSKSGKIVSKALSARGKQLFAQSALKKWSVALQQARKELGITGFCAVNGKTPQGKALYAKVKAILGK*
Ga0103832_1005136	Ga0103832_10051361	F014625	QLNDLYHDMDDKRKIEKDLHELVKEWDVLNEVARTDPDLARAHRDGHCHEAVMWYSHHLPEGMKKLLKDKISLPLLSSMKHSMKDVEHGPRVHRAYEEKVTCASCHSFEYPSATVV*
Ga0103832_1005139	Ga0103832_10051391	F024323	MDVLESSWFLVSSLIIGIVLLVDPKSSLTGSNTNAVLGLFSSPSSGQQFIYNFSAIPILSFFLLTIVLSLNN*
Ga0103832_1005177	Ga0103832_10051771	F002457	QFTDWATTHIAGKIAEIDTSSEVDFYHVSNYSEAEFLKAIEVAVTNKNSREYASLYEFLLTAFVETDATCRGEITYAEFNKLIERAAAVPRTFGLAPPDGTVEARKAIFESMDDTKTGLITFRKFLEWTVTHTAGKVEAHKAGKGYKK*
Ga0103832_1005194	Ga0103832_10051941	F071939	WTSMWEPHLIHYEPKKVLIKEWVTSDSFADDISSVFYEVDRDGNHMLEWNNGEIRNFINKVYQMKGLATPCESTMYDMYRIFDEDNNGGLDAVEAQHLAQAHVMSLVTALHL*
Ga0103832_1005224	Ga0103832_10052241	F023858	YVKLNGPNCCYCDNVDKPKMWDIADSGLFTKVGFVAYEDTTELNDNPVKGAEHWATSSVLPKVLTVTYDYFLHREDNGDVVSHRINFNTSVEQSGEILYGNFAVQHDLDAHRERFAVPQECKGNILSCCDDMDKVDAKWFRHDFAVRQAEKTVV*
Ga0103832_1005343	Ga0103832_10053431	F000070	KQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDATRKLEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCVASLTKGVVKFAQVVGVFPGPRFDDAEGVDQSEADVELLGWEECAENMSFRVDKAWRQRCSQRF
Ga0103832_1005804	Ga0103832_10058041	F020014	FCPFYRDEPNPEYAPKKKSVNKPRAARPPIVATIQRGIRPISLISIIIKD*
Ga0103832_1005863	Ga0103832_10058631	F023858	DSPKQWDIPKSGLFTKVKFNGFEDTTELNDNPVQGAEHWFTNSVLPKVLTVSYDYFLHREDSGDVISHRINFNTSVGQEGSILYGGFQVAHDLDAHRAKFDVPQQCKGNILDCCDNREETMATWFKHDHAVEQATKAEVAV*
Ga0103832_1006307	Ga0103832_10063071	F048725	LDDTMATCTQKANDFEARQQLRAEEIQAIEKAIEIISRNAVSGAAGKHLPSMIQQKTTSLAQFRSGSSSPSQFKVAIYLQDKARQLNSRILSALADRVEKDPFKKVKKMIKDLIVKLMEEANEEVEHKGYCDKELATNEHTRKEKTEAVVMLTAEIDELTASIAALTEQI
Ga0103832_1006330	Ga0103832_10063301	F009426	ESFSTAAKVNKNVKLLLNMTLDEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009350: Microbial communities of water from the North Atlantic ocean - ACM35

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences