Sample 3300009308

Overview

Basic Information
IMG/M Taxon OID	3300009308 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118143 \| Gp0131539 \| Ga0116593
Sample Name	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_3 SPAdes
Sequencing Status	Permanent Draft
Sequencing Center	University of Liverpool
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	265860313
Sequencing Scaffolds	13
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR1-KM17-C101	1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	United Kingdom
Coordinates	Lat. (^o)	54.9632021	Long. (^o)	-1.6348029	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F006143	Metagenome	380	Y
F018557	Metagenome / Metatranscriptome	234	Y
F021528	Metagenome / Metatranscriptome	218	N
F024682	Metagenome / Metatranscriptome	205	Y
F036974	Metagenome	169	N
F042655	Metagenome	158	Y
F043481	Metagenome / Metatranscriptome	156	Y
F046098	Metagenome / Metatranscriptome	152	Y
F078674	Metagenome / Metatranscriptome	116	Y
F080201	Metagenome / Metatranscriptome	115	Y
F089113	Metagenome	109	Y
F091590	Metagenome	107	Y
F104571	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F000613

Metagenome / Metatranscriptome

985

F006143

Metagenome

380

F018557

Metagenome / Metatranscriptome

234

F021528

Metagenome / Metatranscriptome

218

F024682

Metagenome / Metatranscriptome

205

F036974

Metagenome

169

F042655

Metagenome

158

F043481

Metagenome / Metatranscriptome

156

F046098

Metagenome / Metatranscriptome

152

F078674

Metagenome / Metatranscriptome

116

F080201

Metagenome / Metatranscriptome

115

F089113

Metagenome

109

F091590

Metagenome

107

F104571

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0116593_1002274	Not Available	6203	Open in IMG/M
Ga0116593_1009501	All Organisms → Viruses → Predicted Viral	2355	Open in IMG/M
Ga0116593_1035692	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
Ga0116593_1040012	Not Available	1035	Open in IMG/M
Ga0116593_1064725	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	802	Open in IMG/M
Ga0116593_1066348	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	792	Open in IMG/M
Ga0116593_1067737	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	783	Open in IMG/M
Ga0116593_1069503	All Organisms → cellular organisms → Archaea	773	Open in IMG/M
Ga0116593_1086468	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	691	Open in IMG/M
Ga0116593_1092705	Not Available	667	Open in IMG/M
Ga0116593_1100950	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR1-KM17-C101	639	Open in IMG/M
Ga0116593_1126094	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium	569	Open in IMG/M
Ga0116593_1132065	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	556	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0116593_1002274

Not Available

6203

Open in IMG/M

Ga0116593_1009501

All Organisms → Viruses → Predicted Viral

2355

Open in IMG/M

Ga0116593_1035692

All Organisms → cellular organisms → Bacteria

1101

Open in IMG/M

Ga0116593_1040012

Not Available

1035

Open in IMG/M

Ga0116593_1064725

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

802

Open in IMG/M

Ga0116593_1066348

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

792

Open in IMG/M

Ga0116593_1067737

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

783

Open in IMG/M

Ga0116593_1069503

All Organisms → cellular organisms → Archaea

773

Open in IMG/M

Ga0116593_1086468

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium

691

Open in IMG/M

Ga0116593_1092705

Not Available

667

Open in IMG/M

Ga0116593_1100950

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR1-KM17-C101

639

Open in IMG/M

Ga0116593_1126094

All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium

569

Open in IMG/M

Ga0116593_1132065

All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium

556

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0116593_1002274	Ga0116593_10022744	F006143	MQEENPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGATVADYVLMAWLWI*
Ga0116593_1009501	Ga0116593_10095011	F104571	MIDTLKVFTDDFKISDNAGLFVQPATVNYETGETNEHNLFRKDNGKWVTGAKAYVNTGDYQLTIKPIISNGNRNGKVLLFLQTSLPKIIHGENFQALNNDETVQAIDAIAGDLQDRGVGVNLQDCKTSRIDVFRTAIADNPFSSYAPVFRLLSAKRSHTTDYGTTFTWANTQREICVYDKGTEMRNRGVKSSALPTNAIRFEYRLKTSRVCKNETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALATVTANELENGLRVYAKRYGGAFVNRFYRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRHSKLFDEYRMNFEMARGGLGDNTLKDFYLELK
Ga0116593_1024089	Ga0116593_10240891	F000613	MPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYAMNDMVTTGQVRNRPVITFTNG
Ga0116593_1035692	Ga0116593_10356921	F021528	ELGTGSKVEYPLFQTPSHGNHYGSKAYLNADNWNLTLKPLAGGRATGAFLQLSVPKNYYGSNFYSVGEEGTKAVLSKVEGELKEKGVHTPLNEAYLSRVDTFKNIEPEEPFSSYYSLFSLLKARRAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERKLETAGLPPTMRFEHRLLNKQKVQNIYGFGRVGEIFHGGYEVIREKQVESWKGSLFNFTAEELVLLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVIVEALQNFEADRMKIWRAVQVFEEAERELMVLKQEEGSKKTLGSLYEELRRKVCLN*
Ga0116593_1040012	Ga0116593_10400121	F046098	MRIILILAAIVLLVVGILGLFPSIGWAAVPMWRAILEIVVGGLVLIIGIRTR*
Ga0116593_1064725	Ga0116593_10647251	F043481	MPLDIDLERGVRGFNIVRKECPNCNAELIFKIHKNEIHDVGGDGLFYPEENVVRCKVCMSTFKYKTKNTDETK*
Ga0116593_1066348	Ga0116593_10663481	F018557	MAEPKDGRPIFFPENLVTFGNLALFLWIVLDTVAFLLYDTNAGIAFFIVALIAIYGVLHFIGCLRPCYNCIKCTHGMGRLAALYFGKRILKDYKYSYKLPTAIIFTIFIGAFPASFALYSAIIDFTAIKVVVFAVLLAFTIFSGLTWRPKKRTLKAQTPITS*
Ga0116593_1067737	Ga0116593_10677371	F024682	MLLFSLTFGCGKKMTPEDELISKLKAEIGKSLPPMFSGMAENMLENNKAVIIKWLVDNKDLVKQIIDK*
Ga0116593_1069503	Ga0116593_10695032	F042655	MREFEVTIPQEYMNFINKEIKKPKRLNTELLELWLERELDIENPGSYGNLPTDEGHVTVQALPNGNYKLTISNVCFGMIKSHVQPEPHSRRKLTDEDILRCWLEIKIEEDETEHRIKVKELK*
Ga0116593_1086468	Ga0116593_10864681	F080201	LFCPNCKGIILYPEGLSGEKVCSICGLVIDETPVAQTFSQWAPEWHSNWNEEDSETTKEWLTYLRSVSCQLNLPNFPYREEAARIIRTKNRVLFRSQKLSKEKRITVAALIYLILKEYDKLRPIKEISEELSLDI
Ga0116593_1092705	Ga0116593_10927051	F078674	METLKKATENRKAPFEVEGKAGGRVISLRVTERMEQLLEEQAQEWDMSISDTLRGILNFYFLPPLLLEAWESKVEELVDLDTEQKGENRADLNVPTHAQRIEPVFCDSEEAEEYALFIGRLWDKNVKYWEILREEAQVAHRIAGEQLLQTAKALERIQAEMKKAKVEGWVEP*
Ga0116593_1100950	Ga0116593_11009502	F036974	MNDPFKLEFWDNFNDSLYFDYLMHQTMLKTYRITYKTYKGSDTSAPVSYAIKYVKGYNKEDAKAAFNLWKELIVKIELI*
Ga0116593_1126094	Ga0116593_11260942	F091590	MTDVSKAIYSGDWELFPCKGKVYIQDGKRPKIVLTDAEAVQVWQVLNAWIERNARVEVVGE*
Ga0116593_1132065	Ga0116593_11320651	F089113	MELLVIDFSKKHFDCGGRMFILKDSLSFARYREFQKFNLEFGYSASFHDTFKGLREAWELLNNVKLAEAAVVLHNIMYGVVGLEEKDDPSLRICALFIDEEGEDPTVFDEGKMREKIECWAKELDVSPFFQLAASLVPGWINAYKNVSRSGSEETVNEEPE

Scaffold ID

Protein ID

Family

Sequence

Ga0116593_1002274

Ga0116593_10022744

F006143

MQEENPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGATVADYVLMAWLWI*

Ga0116593_1009501

Ga0116593_10095011

F104571

MIDTLKVFTDDFKISDNAGLFVQPATVNYETGETNEHNLFRKDNGKWVTGAKAYVNTGDYQLTIKPIISNGNRNGKVLLFLQTSLPKIIHGENFQALNNDETVQAIDAIAGDLQDRGVGVNLQDCKTSRIDVFRTAIADNPFSSYAPVFRLLSAKRSHTTDYGTTFTWANTQREICVYDKGTEMRNRGVKSSALPTNAIRFEYRLKTSRVCKNETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALATVTANELENGLRVYAKRYGGAFVNRFYRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRHSKLFDEYRMNFEMARGGLGDNTLKDFYLELK

Ga0116593_1024089

Ga0116593_10240891

F000613

MPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYAMNDMVTTGQVRNRPVITFTNG

Ga0116593_1035692

Ga0116593_10356921

F021528

ELGTGSKVEYPLFQTPSHGNHYGSKAYLNADNWNLTLKPLAGGRATGAFLQLSVPKNYYGSNFYSVGEEGTKAVLSKVEGELKEKGVHTPLNEAYLSRVDTFKNIEPEEPFSSYYSLFSLLKARRAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERKLETAGLPPTMRFEHRLLNKQKVQNIYGFGRVGEIFHGGYEVIREKQVESWKGSLFNFTAEELVLLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVIVEALQNFEADRMKIWRAVQVFEEAERELMVLKQEEGSKKTLGSLYEELRRKVCLN*

Ga0116593_1040012

Ga0116593_10400121

F046098

MRIILILAAIVLLVVGILGLFPSIGWAAVPMWRAILEIVVGGLVLIIGIRTR*

Ga0116593_1064725

Ga0116593_10647251

F043481

MPLDIDLERGVRGFNIVRKECPNCNAELIFKIHKNEIHDVGGDGLFYPEENVVRCKVCMSTFKYKTKNTDETK*

Ga0116593_1066348

Ga0116593_10663481

F018557

MAEPKDGRPIFFPENLVTFGNLALFLWIVLDTVAFLLYDTNAGIAFFIVALIAIYGVLHFIGCLRPCYNCIKCTHGMGRLAALYFGKRILKDYKYSYKLPTAIIFTIFIGAFPASFALYSAIIDFTAIKVVVFAVLLAFTIFSGLTWRPKKRTLKAQTPITS*

Ga0116593_1067737

Ga0116593_10677371

F024682

MLLFSLTFGCGKKMTPEDELISKLKAEIGKSLPPMFSGMAENMLENNKAVIIKWLVDNKDLVKQIIDK*

Ga0116593_1069503

Ga0116593_10695032

F042655

MREFEVTIPQEYMNFINKEIKKPKRLNTELLELWLERELDIENPGSYGNLPTDEGHVTVQALPNGNYKLTISNVCFGMIKSHVQPEPHSRRKLTDEDILRCWLEIKIEEDETEHRIKVKELK*

Ga0116593_1086468

Ga0116593_10864681

F080201

LFCPNCKGIILYPEGLSGEKVCSICGLVIDETPVAQTFSQWAPEWHSNWNEEDSETTKEWLTYLRSVSCQLNLPNFPYREEAARIIRTKNRVLFRSQKLSKEKRITVAALIYLILKEYDKLRPIKEISEELSLDI

Ga0116593_1092705

Ga0116593_10927051

F078674

METLKKATENRKAPFEVEGKAGGRVISLRVTERMEQLLEEQAQEWDMSISDTLRGILNFYFLPPLLLEAWESKVEELVDLDTEQKGENRADLNVPTHAQRIEPVFCDSEEAEEYALFIGRLWDKNVKYWEILREEAQVAHRIAGEQLLQTAKALERIQAEMKKAKVEGWVEP*

Ga0116593_1100950

Ga0116593_11009502

F036974

MNDPFKLEFWDNFNDSLYFDYLMHQTMLKTYRITYKTYKGSDTSAPVSYAIKYVKGYNKEDAKAAFNLWKELIVKIELI*

Ga0116593_1126094

Ga0116593_11260942

F091590

MTDVSKAIYSGDWELFPCKGKVYIQDGKRPKIVLTDAEAVQVWQVLNAWIERNARVEVVGE*

Ga0116593_1132065

Ga0116593_11320651

F089113

MELLVIDFSKKHFDCGGRMFILKDSLSFARYREFQKFNLEFGYSASFHDTFKGLREAWELLNNVKLAEAAVVLHNIMYGVVGLEEKDDPSLRICALFIDEEGEDPTVFDEGKMREKIECWAKELDVSPFFQLAASLVPGWINAYKNVSRSGSEETVNEEPE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009308: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_3 SPAdes

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences