Sample 3300009304

Basic Information
IMG/M Taxon OID	3300009304 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118143 \| Gp0131534 \| Ga0116588
Sample Name	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_2 SPAdes
Sequencing Status	Permanent Draft
Sequencing Center	University of Liverpool
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300009304 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0118143 | Gp0131534 | Ga0116588

Sample Name

Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_2 SPAdes

Sequencing Status

Permanent Draft

Sequencing Center

University of Liverpool

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	359547264
Sequencing Scaffolds	33
Novel Protein Genes	36
Associated Families	34

Dataset Contents

Total Genome Size

359547264

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2
All Organisms → Viruses → Predicted Viral	1
Not Available	17
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	1
All Organisms → Viruses	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → unclassified viruses → Circular genetic element sp.

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium

All Organisms → Viruses

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei

Ecosystem Assignment (GOLD)
Name	Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Ecosystem Assignment (GOLD)

Name

Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Type

Environmental

Taxonomy

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

estuarine biome → estuary → sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Sediment (saline)

Location Information
Location	United Kingdom
Coordinates	Lat. (^o)	54.9632021	Long. (^o)	-1.6348029	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

United Kingdom

Coordinates

Lat. (^o)

54.9632021

Long. (^o)

-1.6348029

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002896	Metagenome / Metatranscriptome	522	N
F008247	Metagenome / Metatranscriptome	336	Y
F009657	Metagenome / Metatranscriptome	315	Y
F013592	Metagenome	270	Y
F025033	Metagenome	203	N
F026017	Metagenome / Metatranscriptome	199	Y
F029499	Metagenome / Metatranscriptome	188	Y
F030440	Metagenome / Metatranscriptome	185	N
F036103	Metagenome / Metatranscriptome	170	Y
F039273	Metagenome / Metatranscriptome	164	Y
F039704	Metagenome / Metatranscriptome	163	Y
F040945	Metagenome / Metatranscriptome	161	N
F044219	Metagenome	155	Y
F047488	Metagenome	149	Y
F049307	Metagenome / Metatranscriptome	147	Y
F058780	Metagenome	134	Y
F059923	Metagenome	133	Y
F060461	Metagenome	133	Y
F067249	Metagenome	126	Y
F068505	Metagenome	124	Y
F077757	Metagenome / Metatranscriptome	117	N
F080201	Metagenome / Metatranscriptome	115	Y
F080568	Metagenome / Metatranscriptome	115	Y
F083187	Metagenome / Metatranscriptome	113	Y
F083429	Metagenome / Metatranscriptome	113	Y
F085444	Metagenome / Metatranscriptome	111	Y
F085971	Metagenome / Metatranscriptome	111	N
F089951	Metagenome	108	Y
F102380	Metagenome	101	Y
F102576	Metagenome	101	Y
F103182	Metagenome	101	Y
F105258	Metagenome / Metatranscriptome	100	N
F105437	Metagenome	100	Y
F106103	Metagenome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0116588_1005533	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2975	Open in IMG/M
Ga0116588_1008598	All Organisms → Viruses → Predicted Viral	2284	Open in IMG/M
Ga0116588_1009995	Not Available	2096	Open in IMG/M
Ga0116588_1011783	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1918	Open in IMG/M
Ga0116588_1012205	Not Available	1881	Open in IMG/M
Ga0116588_1023244	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1351	Open in IMG/M
Ga0116588_1026463	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1267	Open in IMG/M
Ga0116588_1027218	Not Available	1249	Open in IMG/M
Ga0116588_1033383	All Organisms → cellular organisms → Archaea	1132	Open in IMG/M
Ga0116588_1037813	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
Ga0116588_1037948	Not Available	1066	Open in IMG/M
Ga0116588_1051209	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	926	Open in IMG/M
Ga0116588_1057278	Not Available	881	Open in IMG/M
Ga0116588_1070987	Not Available	800	Open in IMG/M
Ga0116588_1072011	Not Available	796	Open in IMG/M
Ga0116588_1074964	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	782	Open in IMG/M
Ga0116588_1088028	All Organisms → cellular organisms → Archaea	729	Open in IMG/M
Ga0116588_1110584	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	661	Open in IMG/M
Ga0116588_1111523	Not Available	659	Open in IMG/M
Ga0116588_1118346	Not Available	642	Open in IMG/M
Ga0116588_1130803	Not Available	616	Open in IMG/M
Ga0116588_1137777	Not Available	602	Open in IMG/M
Ga0116588_1138507	All Organisms → Viruses	601	Open in IMG/M
Ga0116588_1139140	Not Available	600	Open in IMG/M
Ga0116588_1144690	All Organisms → Viruses	589	Open in IMG/M
Ga0116588_1149764	Not Available	580	Open in IMG/M
Ga0116588_1153054	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	575	Open in IMG/M
Ga0116588_1162335	Not Available	560	Open in IMG/M
Ga0116588_1174562	Not Available	543	Open in IMG/M
Ga0116588_1178798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	537	Open in IMG/M
Ga0116588_1179992	Not Available	535	Open in IMG/M
Ga0116588_1182617	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	532	Open in IMG/M
Ga0116588_1186701	Not Available	527	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116588_1005533	Ga0116588_10055333	F044219	MAKAVTREFEIFIETVADTGADNTALDMMDYVDIADNQAFEIHEVSLVLDPTEAFPAADVEARFQLADANITTFVSHADRASLYVARQTFDSATLGMFHQESFSSITPLIVSKTLFLRNVCSTGTLDYTLRLKGRIVTPSAKDYMALVLTQTGNLA*
Ga0116588_1008598	Ga0116588_10085983	F013592	MRIDMLTPELVWLEEVLFEESAVPLRVLSQFHPLVRIPVIAYQAADIVATELAIRTIEAGGVGALDIFTPEIRRYEETALVGMGGMII*
Ga0116588_1009995	Ga0116588_10099954	F030440	YDIYTLIGCNLLSFGLFAYARVRLGKLEHALRDLDWEALAGLVGDVAVLKRTIQKLNMRLNGMETADPMAALAKLPQLQQNVTPMAAVKKRGG*
Ga0116588_1011783	Ga0116588_10117831	F103182	QSKSKTKTRRPPKKLQQCVKCGRVGDAMTKHSLTGEHKPPFVWLCRQPCHDEVHKFGLKMTKEEKAALKRQPQCTIQFPPEVDIANPYTKLIEPESLGGKFKQSFKRIDSKNEEQN*
Ga0116588_1012205	Ga0116588_10122053	F049307	MMLTPDEYMSLMRLISSERESEGSSLADRDETPSPPVKKRSRSARRADKMLSMAFKQANARYRKKDGSLRAGRTQADIARLAHKLRKKM*
Ga0116588_1012205	Ga0116588_10122054	F025033	VFLKMNRRIKRNRAVPIHITLAPGLLDEIDARLSHKMSRSNWIRGACEMKLDKDVTEVNDLTDKQLVNILRNRHSYDGPAEAILKSLLEVLSE*
Ga0116588_1023244	Ga0116588_10232441	F067249	LKPGVVPNLKSYLPDNVKIVIDVKNNSAGCKELKNGKREDPNKAQRLRFNELEALTNVKNYAVVVLSETLLPPKGPFKWRFKEEAIGKQNCKVFTLVARQVYPSGGLYLKANIEKMLQNAQMKKTEEFEKLIKYLQNI*
Ga0116588_1026463	Ga0116588_10264631	F060461	AKQFFRSEGSIGWGHLMRERKTLTKDEETVREARRTYRDGIKKAWDIYTQDNLMVKEAKKTLDSAIDEAYKLCLPEHGERMAQTEYEEATKLYFKTLYKVHRKFADTIGQIWSVFIKDMETFRSPI*
Ga0116588_1027218	Ga0116588_10272181	F080568	PDSAHWTTLSDAIVTAEKAALVNVNTIVQTIGYAAGSEVPVFTKTYSTAGTYAPGSGTQAPGDCAAVVRYATAARTSKNHPVYLFNYYHAPWMTPGTPDTLLAGNVTVLNTYAAIWIGAGFSDGATSYNRAGPNGATATGVLIEPLISHRDLPR*
Ga0116588_1033383	Ga0116588_10333831	F002896	MGKMNEDTILHFYRILENSLPESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEASKYLVDRKQDECRVSYDHNNVEYILWVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDTNPRLCKEGTIFHQELYNECVKTFKDLLIHSDAQHH*
Ga0116588_1037813	Ga0116588_10378132	F047488	ETGIYLLDLILDSKINPILLSSFVGALSMFGGENMGKIEEIVIKGLDIQMIIVNKYDIVLIAILDKKVIREDIHAEAEKALDIFYSVYKDEIGDYVELSIFEPFKKALYTQIEDFYNKITENSDIGDFGFFTQAIAKLRNGSR*
Ga0116588_1037948	Ga0116588_10379482	F013592	MMRIDMSLAPELVWLEEVLFEDSVVPLTTLAKFHPLVRIPVIAYQAADIVATELATYTLQEGVVGALNLYTPEIRRYEETALVGMGGMRI*
Ga0116588_1051209	Ga0116588_10512091	F085444	GFSVYENITHKVAIQYPSRWNKNEILNNDFTAVVMFLVPIKPSFSSRENSEIMLQKIRDMVYNEVSTTVVITVKRIPVHKTSHTLQDITNDQIHLLDICFDNVSLLEHSYDRKMREIQTSKLIYTYTDPLENHINKKGMKIIFEEAHKEIILTYCSRNQDFDKFLSVVDRMVDTFRIVEQL*
Ga0116588_1057278	Ga0116588_10572781	F102380	MSSEVLLSNIIPFAGSGLVGYAIGFALKKILKWILIIVGFLCGMFFLGVELLQKYAYV
Ga0116588_1070987	Ga0116588_10709872	F029499	MNDYDAVVMGVLEPILVLSVMAVIAFLVRNNLCC*
Ga0116588_1070987	Ga0116588_10709873	F026017	VDMKKSLAIVLATIALTFGAMLSFTSVGVAAQTFGNLSGKSSGVSSVQIQAPLPSPPGPGPYRGNR*
Ga0116588_1072011	Ga0116588_10720112	F105258	FFNVFFSLVIDENSLTESGRRLMARMLTRPCTITPVDFTIPTVLREISENALLVIDNRKLEHLVTAVEAAVNGGYVKRFGVILLLDSSVAADNRELLRFNVRMRALWRAGIVVIKPWNVFLARTQRDNFRTCDIDLIAARIEQGMKKLPNMFNHPMARLVGVQRVSMGIPLPNRLDWLKLECHN*
Ga0116588_1074964	Ga0116588_10749641	F080201	LKCRKCEGAIVYPEGLSGEKICSKCGLVIDEAPTFKSYTQWNPEWYSNWNEQDSETLKEWLTTLRALSCQLNIPNFPYREEAARTIRTHNKVLFRSQKLTKNKRATLAALMHLILKEYDKMRPIKEISKELSLDNKLVMKQIWIIGKTLNGKKGQLKIQRKTALDYLHENSGKITQNTDLIHSAENTLKKIKRSSGNPIGLAAGAFYNACKEK
Ga0116588_1088028	Ga0116588_10880281	F009657	MKEYEILQDTGSCRKLVAEINRMAKEGWQVKPIGASVSVVYVLIEREISKPATM*
Ga0116588_1091477	Ga0116588_10914771	F105437	PTQLAKRINDLSEKLKPVASEGIRLDFESFTQPEKLILLKNFELQEKYGSMWPCEVITANKELIVKANEIAAKRVTELFLFAMPRAFMLDEVEQWFFKFHFNSFLERWIECQKNVKKWSQKNREDFLRDIKGNPKADKKNKPEVKFDGEENHN*
Ga0116588_1110584	Ga0116588_11105841	F106103	HFWHDIDDKIQDLIQLIRSRHTRFNGTPVEKVIVRLVDAYRASGQVADAIDKGWLK*
Ga0116588_1111523	Ga0116588_11115231	F085971	MDKMLIRLEQSFIESAEKLNDRFSEQDMEEVSEAIEANYEKIRLIMLEQEKSKDKSKPTLLELGNIGSRFFGFNIYYNDDVDDVPISIRELIPTISPVRLDLMATTKTTKSADPNSTYLKAAQVYDDGSIKAK
Ga0116588_1118346	Ga0116588_11183461	F039273	MLENLGIGRSLRGKRDLRGKKVVFVDDGSNPYRTMCFTIAAKLVKKRGAEVETIAPGPDEVPHAKVVEGTPQPKSRIQRPLNRH*
Ga0116588_1130803	Ga0116588_11308031	F077757	MDHNSCNPTILLITGILVSSIFSLIDSYSQDSEMSVIVKLINADKFLAQTWDVNAQLRDKSTDSEISQDQTTFTVSENQTVQLIIPLSNSTKDLNRYSIFVDASSTIDDIDVFGTIDSLRKENNQITLNLTDAR*
Ga0116588_1137777	Ga0116588_11377772	F058780	MFNNFNGVNASNDILPKQFLNYIDYELSCFEKITNKKFFFNLLKNDKLELNVYESKEDNNKSKYQIIYRANNLYQFIKRLLMIREYLI
Ga0116588_1138507	Ga0116588_11385071	F008247	MITMATKKTSMFTLTERVSISAATTDTFATIDLGSYVDVGDRQALQVHSVDFIFQGTTAGEAIWSTFGGAAQASIQVTDLNRGGLVFSNDRALVASGILNFDNDAYLQNATDLYPDNYGKGSDDGRFVVNDQLYITGL
Ga0116588_1139140	Ga0116588_11391401	F040945	IYQTRKPIVRQQYSEVQDIDQISYRSLTHNTRIGDRYIPIVARIIPGIALPLLMGRDFRDDHAESPAQQKQVNELNHPRIYFFKREKTSKPRLTLKQLERIHRDGNHPDFTEMTQECTRLGHKVDKAVELKVSRVIQECQLCLNKNRLFSHGQGQKYNTSFNTDIMVRRERVIEDDYYTHLFTVECIDTGYTVAKYINQ
Ga0116588_1144690	Ga0116588_11446902	F083429	GKAFKKKTSGGKFRKGTMIQYKYVNGRRVGAVKARK*
Ga0116588_1149764	Ga0116588_11497641	F068505	MKAILKIRNRGKRGYDISSIPNKKLEKMNQYRKKRWKIENGFLLL
Ga0116588_1153054	Ga0116588_11530542	F036103	MEKRKMKLQKNQIRILGVASCLIGAFLMAFGEQIIVVYHTEVARVIGILGIGLITTGNKTSLVGKKKEVL*
Ga0116588_1162335	Ga0116588_11623351	F059923	RKKKMRKDTSEIDFVSDIDEFIRLAKRWNTFHKRLLNTLARLPEDVYQFTLQKISFHAGQSQTIQVKEIKKPYMIILKRTDSESLIAHEIAHAYLNYTKTKNNSNDQEAEADELRKKWGFKKKQLCQTFPKGCLNCFNPHCSESKSRNFR*
Ga0116588_1174562	Ga0116588_11745621	F102380	MSSEPLLSSIIPFAGSGLLGYAMGFALKKILKWMLIIVGFLAGMFF
Ga0116588_1178798	Ga0116588_11787982	F102576	MNDLLMLEKYFPGGTLEGGIELANRLDWGLIVKMAGDSYVVSSGDAPIIRMDHKDAVQSFLYGLGLAYAVLPEHLFKSLEKALKEL*
Ga0116588_1179992	Ga0116588_11799922	F039704	TDMFIAVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMRRASTTLISNK*
Ga0116588_1182617	Ga0116588_11826171	F089951	MMMHEHGMQPGMQQKDSVMMEMWENLTEDQKKTLMKRMLDSKIMMKEGMIQHFQFKIETMKMTKTMLDQC*
Ga0116588_1186701	Ga0116588_11867011	F083187	GNLIQPMIPEFVKGNEHEKPNRGQAALKILAEHIAQQLKERGFCVVFEGDLERCWPSGGMSQAERERKIRDFAESQGSTVEILEAGFATRAIFQKSEPGIDAASITVSGPEMSSQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009304: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_2 SPAdes

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences