Sample 3300009118

Overview

Basic Information
IMG/M Taxon OID	3300009118 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118723 \| Gp0139363 \| Ga0117940
Sample Name	Lake sediment microbial communities from Pelican Lake, MN
Sequencing Status	Permanent Draft
Sequencing Center	University of Minnesota - Twin Cities
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	39711029
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Sediment Microbial Communities
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → lake → lake sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	Pelican Lake, Minnesota, USA
Coordinates	Lat. (^o)	46.612069	Long. (^o)	-94.156828	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F024821	Metagenome / Metatranscriptome	204	Y
F032706	Metagenome / Metatranscriptome	179	Y
F039195	Metagenome	164	Y
F045836	Metagenome / Metatranscriptome	152	Y
F052355	Metagenome	142	Y
F072871	Metagenome	121	Y
F079367	Metagenome	116	Y
F084900	Metagenome / Metatranscriptome	112	Y
F094061	Metagenome	106	Y
F097602	Metagenome / Metatranscriptome	104	Y

Family

Category

Number of Sequences

3D Structure?

F024821

Metagenome / Metatranscriptome

204

F032706

Metagenome / Metatranscriptome

179

F039195

Metagenome

164

F045836

Metagenome / Metatranscriptome

152

F052355

Metagenome

142

F072871

Metagenome

121

F079367

Metagenome

116

F084900

Metagenome / Metatranscriptome

112

F094061

Metagenome

106

F097602

Metagenome / Metatranscriptome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0117940_101619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	2010	Open in IMG/M
Ga0117940_108207	All Organisms → cellular organisms → Bacteria → Proteobacteria	739	Open in IMG/M
Ga0117940_108389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	731	Open in IMG/M
Ga0117940_110700	Not Available	658	Open in IMG/M
Ga0117940_111765	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	633	Open in IMG/M
Ga0117940_112186	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	623	Open in IMG/M
Ga0117940_114017	Not Available	588	Open in IMG/M
Ga0117940_116261	Not Available	552	Open in IMG/M
Ga0117940_117335	Not Available	538	Open in IMG/M
Ga0117940_118247	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	527	Open in IMG/M
Ga0117940_119937	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0117940_101619

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium

2010

Open in IMG/M

Ga0117940_108207

All Organisms → cellular organisms → Bacteria → Proteobacteria

739

Open in IMG/M

Ga0117940_108389

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

731

Open in IMG/M

Ga0117940_110700

Not Available

658

633

623

Not Available

588

Open in IMG/M

Ga0117940_116261

Not Available

552

Open in IMG/M

Ga0117940_117335

Not Available

538

Open in IMG/M

Ga0117940_118247

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae

527

Open in IMG/M

Ga0117940_119937

All Organisms → cellular organisms → Bacteria

508

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0117940_101619	Ga0117940_1016192	F097602	VVILPSEGPSALGRCNCDTLSPKRNSNVDVMNRGSADEAVVIVKFGADELMVTWRRVKHRISDRTLEVKGGTCKRPWPLIIDRRTEISLTGAVDYLRRKQ*
Ga0117940_108207	Ga0117940_1082071	F094061	MGEGKHDVEIRGGQEFGLAFFKPSLSGDVLTLGAVSIAAGVIEDTLSAAVGTALDVASQGRGAAVKEVGDDSVLIWG*
Ga0117940_108389	Ga0117940_1083893	F024821	MEGSTREKFIHTLMQYQEKFGQEKAAAVQEKFSQSREKIVADSASEIDWFPSWKKSQILEDLLAKTYLE
Ga0117940_110700	Ga0117940_1107001	F079367	MKTPFTRGGVAGDKSRHKDDIAWWMSRYESLCTTQAEDIVRKAMAKLNDAVALRDQALDLVAQLDQDISEAEHEITRLGGATFIEKSEPMIEELKVYFDNLYESLKRSRPEEVTLAARRGRKLE*
Ga0117940_111765	Ga0117940_1117651	F045836	MDNPNLFTALAYYTVSGFLDPIQWLICGICGWSVERLDQAMIAGAAMVSVLYIAMAAFYPDGKLFSFPTPHVGIAILGKAIGAVL
Ga0117940_112186	Ga0117940_1121861	F084900	LWNVCKKDKNRSLKMGKSIVARKINDDVRASLAFIEALSRTADMVFSKEEIIISEKMKIGDAVICTIDAQKGNGDSSHAKGQAYIYSDLVIVCVESVSKKLMEPIYPHQYEYLSY*
Ga0117940_114017	Ga0117940_1140172	F039195	VNTMVLATVLGLLALFSFVSILLSGDDELPEADPRDKLPVWARFGLR*
Ga0117940_116261	Ga0117940_1162612	F072871	PENPDEVLVARLEMLVARLVAARVSGRIGYWAVFEDERGVSHYAFTADPAYADLSPENAARPTGAVTAIDRAIERYRATLTGFRPAP*
Ga0117940_117335	Ga0117940_1173352	F052355	IGITQRELLLEMREDIWGLKATVDAIARDQALGVERRAAMQRSADSIYERLDGHDRDLDRMLAWQNRADGALVLARWALGASLVSLVAVALQVLAAVGHAVNGGIP*
Ga0117940_118247	Ga0117940_1182471	F032706	MYYKIALPGTALALEDIEQNNAKGGDIMKAPNKTATFCQWVADPTETCIGQTRARVAEVMVIEPIPGRIFVPAGGVATRVRKVPERIVKYEKRGPVGVITARVQNIGEAYDEIDALLDRIEQDKDVQVVAIYTLNGLFASLPIR*
Ga0117940_119937	Ga0117940_1199371	F039195	SNRRTAGVTPVTTTEVRTMIIATVLGLLALFSFVSILLSGDDELAEADPRDRLPVWARFGLR*

Scaffold ID

Protein ID

Family

Sequence

Ga0117940_101619

Ga0117940_1016192

F097602

VVILPSEGPSALGRCNCDTLSPKRNSNVDVMNRGSADEAVVIVKFGADELMVTWRRVKHRISDRTLEVKGGTCKRPWPLIIDRRTEISLTGAVDYLRRKQ*

Ga0117940_108207

Ga0117940_1082071

F094061

MGEGKHDVEIRGGQEFGLAFFKPSLSGDVLTLGAVSIAAGVIEDTLSAAVGTALDVASQGRGAAVKEVGDDSVLIWG*

Ga0117940_108389

Ga0117940_1083893

F024821

MEGSTREKFIHTLMQYQEKFGQEKAAAVQEKFSQSREKIVADSASEIDWFPSWKKSQILEDLLAKTYLE

Ga0117940_110700

Ga0117940_1107001

F079367

MKTPFTRGGVAGDKSRHKDDIAWWMSRYESLCTTQAEDIVRKAMAKLNDAVALRDQALDLVAQLDQDISEAEHEITRLGGATFIEKSEPMIEELKVYFDNLYESLKRSRPEEVTLAARRGRKLE*

Ga0117940_111765

Ga0117940_1117651

F045836

MDNPNLFTALAYYTVSGFLDPIQWLICGICGWSVERLDQAMIAGAAMVSVLYIAMAAFYPDGKLFSFPTPHVGIAILGKAIGAVL

Ga0117940_112186

Ga0117940_1121861

F084900

LWNVCKKDKNRSLKMGKSIVARKINDDVRASLAFIEALSRTADMVFSKEEIIISEKMKIGDAVICTIDAQKGNGDSSHAKGQAYIYSDLVIVCVESVSKKLMEPIYPHQYEYLSY*

Ga0117940_114017

Ga0117940_1140172

F039195

VNTMVLATVLGLLALFSFVSILLSGDDELPEADPRDKLPVWARFGLR*

Ga0117940_116261

Ga0117940_1162612

F072871

PENPDEVLVARLEMLVARLVAARVSGRIGYWAVFEDERGVSHYAFTADPAYADLSPENAARPTGAVTAIDRAIERYRATLTGFRPAP*

Ga0117940_117335

Ga0117940_1173352

F052355

IGITQRELLLEMREDIWGLKATVDAIARDQALGVERRAAMQRSADSIYERLDGHDRDLDRMLAWQNRADGALVLARWALGASLVSLVAVALQVLAAVGHAVNGGIP*

Ga0117940_118247

Ga0117940_1182471

F032706

MYYKIALPGTALALEDIEQNNAKGGDIMKAPNKTATFCQWVADPTETCIGQTRARVAEVMVIEPIPGRIFVPAGGVATRVRKVPERIVKYEKRGPVGVITARVQNIGEAYDEIDALLDRIEQDKDVQVVAIYTLNGLFASLPIR*

Ga0117940_119937

Ga0117940_1199371

F039195

SNRRTAGVTPVTTTEVRTMIIATVLGLLALFSFVSILLSGDDELAEADPRDRLPVWARFGLR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009118: Lake sediment microbial communities from Pelican Lake, MN

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences