| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008869 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117913 | Gp0125707 | Ga0103381 |
| Sample Name | Microbial communities from dairy cow rumen, for metatranscriptome studies - 6180_control diet |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Aarhus University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 20860238 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → cellular organisms → Eukaryota | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | ||||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008062 | Metagenome / Metatranscriptome | 340 | Y |
| F008855 | Metagenome / Metatranscriptome | 327 | Y |
| F014928 | Metagenome / Metatranscriptome | 259 | Y |
| F040462 | Metagenome / Metatranscriptome | 161 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103381_1000697 | Not Available | 684 | Open in IMG/M |
| Ga0103381_1001417 | All Organisms → cellular organisms → Eukaryota | 553 | Open in IMG/M |
| Ga0103381_1001564 | Not Available | 537 | Open in IMG/M |
| Ga0103381_1001638 | All Organisms → cellular organisms → Eukaryota | 530 | Open in IMG/M |
| Ga0103381_1001765 | Not Available | 517 | Open in IMG/M |
| Ga0103381_1001852 | Not Available | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103381_1000697 | Ga0103381_10006971 | F040462 | KMTSKTIKLLLSFALFSSIVSLKLQLVDEDYVIVQIGYPSKEYKLIVDPVGPFTYLFKENNSTSKRDGDLASTHDFQNVFGNFSGVWKNDFFYLTEDRLMNFRMDYLEIQKKETKLKCDGVLGLGYSFQNSYGNIYETLEKMYNVFKSKKIFSYDKKKMQITLGEFPERSNYNPTVYKIYEKPEYPGIFLELDKLRFMTDYDQTKYLTEEDLHDDALLTLLPVVIAP |
| Ga0103381_1001417 | Ga0103381_10014171 | F014928 | VINKRIQPVIHKEIQPIIHQEIQPVITTEVQPIIQREITPVVHKQIQKIIHQEVQPVIIKRVQQIIHQEITPVVHKEIQPVIQQEIQPVITKEIQPIIQQEIIPVIHKEIQPVINQKIQPVITKEIQPVINKKIQPVIHKLVQPIIHENIQPVITKEIQPVINQKIQPVIHKVVQPIVHENIQ |
| Ga0103381_1001564 | Ga0103381_10015641 | F008855 | MLKHLSKDYTSNKNSNFNLSFLVDVGKTNWYNGEEKQNEDFLNKDLKEQIPKSQIFEINSLIFNITKHKREILTKYKCFFDEQSNSLSLILTEDICFSDFTKEIMMNLFEFAQKVGIETIYFLVAKKNAQYIRIVQDLMIVGFEVDEKVKTVSIEDKVYKVLMLPVKDQE |
| Ga0103381_1001638 | Ga0103381_10016381 | F014928 | EVQPVIIKRIQQIIHQEITPVVHKEIQPIIQQEIQPVITTEIQPIIQKEIIPVIHKEIQPIINQKIQPVITKEIQPIITKKIQPVIHKEVQPIIHENIQPIITKEIQPIITQKILPVVHKEIQPIIHKEIQPVVTTQIQPIITKKIQPVIHKEIQPIVHQEIQPVITTEIQPIITQ |
| Ga0103381_1001765 | Ga0103381_10017651 | F008062 | KFILVLLLAVSCSSFGLREVPVDDIYSAVVALFRGMAETEEATCAGVLENQKDKILEIVYAAIDEVKAGADVSTAAQNALIKLMGVDGLVSECNVLAMPAIITKVTSKDGLVDIFQALIDNIDDVYAYGENIKAAFDEKDYDAAAEAFGHILAIALDFQVNL* |
| Ga0103381_1001852 | Ga0103381_10018521 | F008062 | TIYAAVVALFKGMAETEEAKCSAVLVNQKEKILEIVHAAIDEVKAGTAVETAIQNAAMKLMGVDGLVSECNVLAMPAIINKFTDKTELVGVFQTLIDNIDEVFAYGENIRDCIKNKDYNGAAENAGHILSIALDFQVNL* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |