NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008833

3300008833: Eukaryotic communities of water from the North Atlantic ocean - ACM7



Overview

Basic Information
IMG/M Taxon OID3300008833 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117985 | Gp0126470 | Ga0103881
Sample NameEukaryotic communities of water from the North Atlantic ocean - ACM7
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Georgia
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size8349660
Sequencing Scaffolds16
Novel Protein Genes22
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium1
Not Available5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica3
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEukaryotic Communities Of Water From Amazon River, Brazil And North Atlantic Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water → Eukaryotic Communities Of Water From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pacific Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000044Metagenome / Metatranscriptome3572Y
F000048Metagenome / Metatranscriptome3365Y
F000073Metagenome / Metatranscriptome2639Y
F000075Metagenome / Metatranscriptome2622Y
F000953Metagenome / Metatranscriptome822Y
F001926Metagenome / Metatranscriptome616Y
F005448Metatranscriptome400N
F006308Metatranscriptome376Y
F009464Metatranscriptome317Y
F012568Metatranscriptome279Y
F033768Metatranscriptome176Y
F037182Metatranscriptome168Y
F041786Metagenome / Metatranscriptome159Y
F045522Metatranscriptome152N
F047099Metatranscriptome150Y
F050126Metagenome / Metatranscriptome145Y
F078189Metatranscriptome116N
F083652Metatranscriptome112N
F093202Metatranscriptome106Y
F100323Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103881_100005All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium1453Open in IMG/M
Ga0103881_100075Not Available967Open in IMG/M
Ga0103881_100226All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata729Open in IMG/M
Ga0103881_100296All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra679Open in IMG/M
Ga0103881_100325Not Available663Open in IMG/M
Ga0103881_100352Not Available652Open in IMG/M
Ga0103881_100386All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum635Open in IMG/M
Ga0103881_100409All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica623Open in IMG/M
Ga0103881_100533All Organisms → cellular organisms → Eukaryota578Open in IMG/M
Ga0103881_100688All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Macrosiphini → Acyrthosiphon → Acyrthosiphon pisum541Open in IMG/M
Ga0103881_100732All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda529Open in IMG/M
Ga0103881_100749Not Available525Open in IMG/M
Ga0103881_100831All Organisms → cellular organisms → Eukaryota511Open in IMG/M
Ga0103881_100848Not Available509Open in IMG/M
Ga0103881_100876All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica505Open in IMG/M
Ga0103881_100905All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103881_100005Ga0103881_1000051F001926VRHEDIPETNNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERITRRYERKRIKIEKLLTLGYTTSGDP*
Ga0103881_100075Ga0103881_1000751F083652LERVEAGSAKRMFGGLASEDERAMQANPSWQKLLVKLTCGALLVSFFALGRATAQLGSGAAQPAQPEMPQGLQHKQWEQSAIQRWSDLGPVQPKPEHLEGIQISDWKLSDVRTLHVGNGAARNQVGADMPEELRGIIQTWSERGTADDVIKTAKFVGGSAKQPQGELDHFQCLYTPDWAAFYFFSDGDKDAPIVFLLDGLIMHKHYGDKLEWLPIPGGKKAYYSVKPRAEYAAELQAFFK
Ga0103881_100226Ga0103881_1002262F009464ADAVFFPSKLVRALSDYTVPQEGVYMENCKYVDWGYFGNLEVFSKQAFITLVDNLETCYTSIPWKDGVLGGKYGPMGEDLFAQKCMDMLGVGRQENWMLTTDGACQADRPEEEKHNKKYVPPCEGVSTPTIHPYKKPEMYRTCWQQAVDA*
Ga0103881_100296Ga0103881_1002961F100323MSPAVEEPGLSLFCFAVYTKNTGSPKPSQELELFRMQRENSWSLFSCAEWAVYSDVVEDLGGGVKTIEVRDVKGDFNILKRKETGCWVNTGMFVQVWSAIRDAGHATNHNWVIKVDADAVFFPSKLVRALSDYTVPQEGVYMENCKYVDWGYFGNLEVFSKQAFITLVDNLETCYTSIPWKDGVLGGKYGPMGEDLFAQKCMD
Ga0103881_100321Ga0103881_1003211F000044GVDFSGCVDDEETGLCCVEKEETIQTIQKDPILECTHKNVEKCHYTYVTQFSPTQEEVCEENFEKTCQITFKQQAVEETVKKCYKPLIKECNGQGEDICQTVYESACTTKYVEKQPGKFVGDTSCEKLPVEICGAGCVTTEGPEECHDKTITSLIDVPEEVCDLNPQKTCKFQTKLVPKLKPAHECTTIPREVCNLKFSSPKPVDKPLKTKWCLDPTPAEP
Ga0103881_100325Ga0103881_1003251F045522FHFLFQSFILNNYITKMVAQALSPRNKNKTFAKLPTEKWGCDFNQAAPAELIVTGREGYNETLNGRYLLGEGLHEGRVYYKHTERKFVIRWCPAKGSWFFDWRGLNTDTTASGALAEDVESPHLATKAWRVYDGSKWISDAKITLNATVESMLNEVKIIKVEQIVAHASSGGVSV*
Ga0103881_100352Ga0103881_1003521F041786AEAFRAQLMTFGNKFSASEVDDAFAEFQIDGGMIDAAHLKGLMVSK*
Ga0103881_100358Ga0103881_1003581F000048SAAQKMTTHAEADAEVAGLKERYDKVKSVSDTWVKKVTVLVKEWVLLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVEDL*
Ga0103881_100386Ga0103881_1003862F000953PRFASDSDDIFMRSMIEQYALEEKTKVVEHDDGTKTGGEPSGKFWMNEASAAAAAREVLGTHKGLSGKLLDDYMTTYFAKAWGHFDVNQTGEVDVIKSPQFMRFLASDQYMSLQ*
Ga0103881_100393Ga0103881_1003931F000073LQWERDIPQEALDNLVALASNDFHKNLGKIIHDIYLTGHNLFKDMPQGDHKKRAKYRFASKTLMRILPNELKAEVEGLIAGKTMTLDLYEILGQCTWGQGKSL*
Ga0103881_100409Ga0103881_1004091F078189VTILILLKRTEDEKPDSRMFDLHGAWSFGGKSRSVLLLSGNDSSWKRESDVRVQKLRDVGSLGTLLLASSVCDWKSFHSKDLNGSRSSSMASAHVSVALGNGTVGLGVSVFSVHVVGSRSRVVSDPDAEVLHNTGGLLSNLLHGDDFAGGLVNLLVVRDEVPESGFRANRVGSEESHSVHRWVRLSGRRQLSAGDDELAEIALCLHF
Ga0103881_100533Ga0103881_1005331F005448FRCGLFFPDPADKSPDKSALPYLNLYIFNATFDAKAECDSGTPNVERYNTFCAEVWDKGGKGLVLTSPSLNKKRAADGISIGDDICNWVKTEGKTPFVGKNSKKFPNGLEFGMYSNSCGNKLWDWAGRIHHEIVCCAKGLHTPCDF*
Ga0103881_100576Ga0103881_1005761F000075ANRYDSMNEDDLLVNLESTLSSALSSEARGDSDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103881_100688Ga0103881_1006881F033768GMVLVKAREGQSPIQSRQDVQDVQVPAGEAVDIFYRYGFFSLSVRVVPRDDHGSWIIREPTTQIFTPGSIRQVKTRGNNKFQDQFQIFFCDDLNELMQHYFHDFTAEGVREPHRLYTGSWRTPTIVKYFGLSDDTLHSDSGFVLVKLVKERVEVKTEGIPVLKSDAQTAFNRIRVGDEK
Ga0103881_100732Ga0103881_1007321F006308DHIVPNFEEIWPSNKDKSAKYKRRLIGMEYYLDAMEHHGLKGHLPQPDNFTTCGKLGIEINQYNCPIECYDEAVIEEMTEDREMLTNPDLVEARKDLKTARGENPLVAQKMMTFDPSKSNILSAITAEEGQKMTRTA*
Ga0103881_100749Ga0103881_1007491F012568QTMAGEDPEWRNMLITGYKDCYDIARSWPQSTLNRNPLMKVFGRHMVFFKCARKEEAKCCGMACANDMLTTLYGSNDAFDWTQYGMPQNKYERAAWTMKIMYGTASPEEHFIHDFFFSNPMM*
Ga0103881_100824Ga0103881_1008241F000075LVAAVAANQFDNMNEDELLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILRRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103881_100831Ga0103881_1008311F047099KNYCCVCNISFFLIQIETAISMSPLDFFRFGPLRIVAMSIATVTSMPMPQVGSRFLPGAPAVNFNSPSTQLAGLGALGTGIFAASSVASGNDQIRIRPNLGLNFNPETGELAPAVTANVQVGDGPVAPTFNVGGQFDPNTNNGIPIAPVVGTGLNIGDGNGGFNPAVTSN
Ga0103881_100848Ga0103881_1008481F093202MYKELGEEQPRSGKTLLGVSLLMGFALGVFVSPVLFARSKADEPAINMMASPMSMTCLRVPAISVNAMQNTLRKNGVPPSPMEKFALTSFAATRNPSMKAQAKEEYEKLDHATQTKLKQLSKDLVVRAAAFSPEDMAGVSAPLGFWDPAGFAKDE
Ga0103881_100876Ga0103881_1008761F050126MQLKVRKSVELFECLAVGNSGKDVSHSAGSLGEGVGEVLLGEGAVATVFSDEGSESGGDLTVELAEVFLVKDKGLVGFFVFGAWESGVDLCGLLEDLLDPLAGSLDVLVGGGGVVVGKIEEGSGVTSELVKSLCGVLDLSGGGDNDEGGGELHFYYF
Ga0103881_100902Ga0103881_1009021F037182KVSGNVEARSASGKMVDFYHIDNYTEEEFMKAITAAIKDQKSPEFKRLYEFLLTVFVEEDEACRGVVCREGFDRLVNRAALVPRQFGVAPAVSSPEKIDKIYASMEDPRFKGVTFRKFLEWTVKHLEGKVA*
Ga0103881_100905Ga0103881_1009051F050126MQLKVRKSELLKCLAVGDSGKDVSHSDGSLGEGVGEVLLGEGAFAAVSSDEGSEGGGDLAVQLAEAVLVEDEVVVGLGIIFGAGVSEVDLVGLGEDSVNPLLGSGNVLVRGGGVVVGQVEEGGGVAGELVKSLDGVSVLASGGDDDEGGGE
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