NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008811

3300008811: Microbial communities from dairy cow rumen, for metatranscriptome studies - 2155_rapeseed oil diet



Overview

Basic Information
IMG/M Taxon OID3300008811 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117913 | Gp0125704 | Ga0103378
Sample NameMicrobial communities from dairy cow rumen, for metatranscriptome studies - 2155_rapeseed oil diet
Sequencing StatusPermanent Draft
Sequencing CenterAarhus University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24530930
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Eukaryota2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Dairy Cow Rumen, For Metatranscriptome Studies
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006460Metagenome / Metatranscriptome372N
F012427Metagenome / Metatranscriptome280N
F012836Metagenome / Metatranscriptome277Y
F013733Metagenome / Metatranscriptome268N
F015040Metagenome / Metatranscriptome258Y
F045443Metagenome / Metatranscriptome153Y
F051988Metagenome / Metatranscriptome143Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103378_1000550Not Available843Open in IMG/M
Ga0103378_1000678All Organisms → cellular organisms → Eukaryota786Open in IMG/M
Ga0103378_1000805All Organisms → cellular organisms → Eukaryota733Open in IMG/M
Ga0103378_1002080Not Available531Open in IMG/M
Ga0103378_1002087Not Available531Open in IMG/M
Ga0103378_1002335Not Available512Open in IMG/M
Ga0103378_1002444Not Available504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103378_1000550Ga0103378_10005501F012836LGLGYSFQNSYGNIYETLEKMYNVFKSKKIFSYDKKKMQITLGEFPERSNYNPTVYKIYEKPEYPGIFLELDKLRFMTDYDQTKYLTEEDLHDDALLTLLPVVIAPKHRIKNLYTNYTTLFNTSESTYSKKSEQNETKFFTDFYLTNPNKHMDHIELVFDRMAYKFKPFEQKPDGKYRPKIRFGNDQKYLFKYWIVGVDVIDVDRFDFNFEDSTVKLYSKPSYDITKSKPQLLRDVFVYMTVICIMLGFGFRVFCQKKKEKEIKPGEELTELL*
Ga0103378_1000678Ga0103378_10006781F015040KRMKFLNLFINNLVQSESFKASEILLSFLSYEDRGKFDSKFKEYTTQQPSSYVEEYRTLDGKVTISHDEGNEKYFTNINKYFRLQGQILDRLNFSLKMFFNNMNQVAESLQDVQKNFEILHVLNTRVLMKQTITKSYEEMSCFFKNYRKILIKQNEMVKNHMKDFFKYINLEGKAYTELIERREELKAKYTAENQRVTAKKEKLYATGDITKFELGSDEKVVDKDRILHDKPYAFEHICKSDTSNLQKIYNQLGYANKMNMR
Ga0103378_1000805Ga0103378_10008051F012427LIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGDTDEGFSAKVYHKKDMICKRRAHSLIYFNDFIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTSKDCEEVDVKKNRMGVISLDFDRMLIFGGERNNKEYKDAYIYEFYEKKFYQFADLVRTSNFIMSPVYSQGKY
Ga0103378_1002080Ga0103378_10020801F013733GEEEYTKPVDVTDFVKYDRDNLWRTTNDVMNQYIPPIEGGTNDTSTGLKTTISPIQAKHDKEAENHIYFDPLKKYAQTAEDEGNHIERNPLDNHKLKHNNYFPMSRLVGSYWDKVDKELYFRNRYDKLSFDPTERDSGYSTNLMDHIEFNAFYDKNVDNGTSHPREDYKQTEYRNT
Ga0103378_1002087Ga0103378_10020871F006460MEPKRFRISQDGQEYAMAIKLLGERVKIECVDASVPGAPIYCRTYTVDELANESRFFQMVPRSNEAQIELMNVVMSEKIRLYNRGDYMEVTFFLPNGEDLMVQLPRESLKMPMINQNMGQSVQQSVVYDPVTGQSRIQTSVVPGVKRSLYDEVRQRPGFGVPFVDSYGDEGFFETGL
Ga0103378_1002335Ga0103378_10023351F045443YGIDIPAWKQTVNEADCSDEDCAEYCKEKYQGAFVNGVNKHVCYSYEVLESICIVIRYDKLRDEYIFHGGCYPGNQTYLMRPAKFGEENDFRDVEIEIRDFSDPLVQAGEWTDYEYNFGQFWRYISFVLKILGLASLGLLGYLAYDIYITREKYKNAPNLIAGEEEGMPG
Ga0103378_1002444Ga0103378_10024441F051988NYKLINTLQEGYTGNDMMADLDLSQLAMQGQFHDYRSRVDLFDSYLIHVEANLATKATKSVAVTAYVAGNAASNQFQKGGMIGKWEPNTKMTYINDLLGWYNGIPVLRSTDIKENVGNKEATFYAIIKTQDGQMAPLARGIYMPLTDTPTVGNYNNPTQMASGIYYQ
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