NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008810

3300008810: Microbial communities from dairy cow rumen, for metatranscriptome studies - 2155_control diet



Overview

Basic Information
IMG/M Taxon OID3300008810 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117913 | Gp0125703 | Ga0103377
Sample NameMicrobial communities from dairy cow rumen, for metatranscriptome studies - 2155_control diet
Sequencing StatusPermanent Draft
Sequencing CenterAarhus University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size18900503
Sequencing Scaffolds4
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Dairy Cow Rumen, For Metatranscriptome Studies
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006460Metagenome / Metatranscriptome372N
F008062Metagenome / Metatranscriptome340Y
F008866Metagenome / Metatranscriptome326Y
F040462Metagenome / Metatranscriptome161Y
F096592Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103377_100672Not Available664Open in IMG/M
Ga0103377_100823Not Available627Open in IMG/M
Ga0103377_100911All Organisms → cellular organisms → Eukaryota610Open in IMG/M
Ga0103377_101572Not Available512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103377_100467Ga0103377_1004671F006460MEPKRFRISQDGQEYAMAIKLLGERVKIECVDASVPGAPIYCRTYTVDELANESRFFQMVPRSNEAQIELMNVVMSEKIRLYNRGDYMEVTFFLPNGEDLMVQLPRESLKMPMINQNMGQSVQQSVVYDPVTGQSRIQTSVVPGVKRSLYDEVRQRPGFGVPFVDSYGDEGFFETGLPSKFSSVGVVPTPLVGSVPLNSSIGGSNVLVNSGVGGVALTNSGLGVPLANSGIAVNPSIGSNVLANSGVG
Ga0103377_100672Ga0103377_1006721F040462KMASKTIKLFLSFILFSSIFSLKLQLVDEDYVIVQIGYPSKEYKLIVDPVGPFTYLFKENNSTSKRDGDLASSHDFQNVFGNFSGVWKNDFFYLTEDRLMNFRMDYLEIQKKETKLKCDGVLGLGYSFQNSYGNIYETLEKMYNVFKSKKIFSYDKKKMQITLGEFPERSNYNPTVYKIYEKPEYPGIFLELDKLRFMTDYDQTKYLTEEDLHDDALLTL
Ga0103377_100823Ga0103377_1008231F096592VKYIISLGYTNKPLTTFVFAYMITCNPLFGNLLGAKLSPKYGGYKDKNSLYFVLAHQILACIAFTPAPYFEEWWKFCIFASFFQVLGMANVGPIGNVITGSLNSEQKKRSAGVLAIFNVIIGSVPAPPIYGLILDRWGEYDKHCAMKAYKNYLYLSVPLICIAIAIRHLRFKNKGEPLIDKEKKDEVEYKEPMQEFVDDFKLKTKDEQP
Ga0103377_100911Ga0103377_1009111F008866MFKFRQIGDTDEGFSAKVYHKKDMICKRRAHSLIYFNDFIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTSKDCEEVDVKKNRMGVISLDFDRMLIFGGERNNKEYKDAYIYEFYEKKFYQFADLVRTSNFIMSP
Ga0103377_101572Ga0103377_1015721F008062VSSFRIREIPVDQIYDAVVALFKGMAETSECKCAAVLTNNKAQILEIVYAAIDEVKAGTPIETAVQNAALKLMGIDGLVSECNVLAMPAIITKITTKDGLVEIFQTLIDNIDEVYSYGEKIKEGIQNKDYNAAAEAFGHIFAIAFDFHVNL*
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