Sample 3300008728

Overview

Basic Information
IMG/M Taxon OID	3300008728 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053334 \| Ga0115675
Sample Name	Human stool microbial communities from NIH, USA - visit 2, subject 763840445 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	195331089
Sequencing Scaffolds	8
Novel Protein Genes	8
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	National Institutes of Health, USA
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F067720	Metagenome	125	Y
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F076190	Metagenome	118	Y
F081354	Metagenome	114	Y
F087335	Metagenome	110	N
F090515	Metagenome	108	N

Family

Category

Number of Sequences

3D Structure?

F051936

Metagenome

143

F067720

Metagenome

125

F068855

Metagenome

124

F074899

Metagenome / Metatranscriptome

119

F076190

Metagenome

118

F081354

Metagenome

114

F087335

Metagenome

110

F090515

Metagenome

108

Scaffold	Taxonomy	Length	IMG/M Link
Ga0115675_100291	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	75210	Open in IMG/M
Ga0115675_102201	All Organisms → cellular organisms → Bacteria	11642	Open in IMG/M
Ga0115675_103128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8281	Open in IMG/M
Ga0115675_104357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5993	Open in IMG/M
Ga0115675_108493	Not Available	3167	Open in IMG/M
Ga0115675_112986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	2094	Open in IMG/M
Ga0115675_114787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1847	Open in IMG/M
Ga0115675_115589	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0115675_100291

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron

75210

Open in IMG/M

Ga0115675_102201

All Organisms → cellular organisms → Bacteria

11642

Open in IMG/M

Ga0115675_103128

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

8281

Open in IMG/M

Ga0115675_104357

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

5993

Open in IMG/M

Ga0115675_108493

Not Available

3167

Open in IMG/M

Ga0115675_112986

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158

2094

Open in IMG/M

Ga0115675_114787

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1847

Open in IMG/M

Ga0115675_115589

All Organisms → cellular organisms → Bacteria

1755

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0115675_100291	Ga0115675_1002917	F051936	MKQEGTGQVLFFPLALRGKALGFSVLQEHAVMIPVISIFFATLIIRYLSIHISIKK*
Ga0115675_102201	Ga0115675_1022015	F087335	MPELYFNDANLLPESCEEEQYAEAVLNDILAGKTANTEMCILPCFYHAPMCKGMLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVEEVYQRVSNYDFDEPCAGSMPS*
Ga0115675_103128	Ga0115675_10312810	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTAVGKDEVTSSNLVSSSRT
Ga0115675_104357	Ga0115675_1043574	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGEEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS*
Ga0115675_108493	Ga0115675_1084935	F067720	MASTTYRHLGDVTEMYAAQEQFRDLTKTYHLGNVPVMVRNAGQLPQPFWLGAACGGGSGGAAR
Ga0115675_112986	Ga0115675_1129864	F068855	VPTVEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSE*
Ga0115675_114787	Ga0115675_1147873	F081354	LIFGQTKRALDLVRENQQSSAHNFVKDFSSFFPESRRRSPLKKGAVATIPLEYGKAEVQILFEPLQATISSMELPKNFENKKLPNTLRRLAFLP
Ga0115675_115589	Ga0115675_1155894	F076190	ITIFVKNVFTAASRVLGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL*

Scaffold ID

Protein ID

Family

Sequence

Ga0115675_100291

Ga0115675_1002917

F051936

MKQEGTGQVLFFPLALRGKALGFSVLQEHAVMIPVISIFFATLIIRYLSIHISIKK*

Ga0115675_102201

Ga0115675_1022015

F087335

MPELYFNDANLLPESCEEEQYAEAVLNDILAGKTANTEMCILPCFYHAPMCKGMLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVEEVYQRVSNYDFDEPCAGSMPS*

Ga0115675_103128

Ga0115675_10312810

F074899

MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTAVGKDEVTSSNLVSSSRT

Ga0115675_104357

Ga0115675_1043574

F090515

VTTCCKAGPKAALQGTAPGRVACLEFAGEEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS*

Ga0115675_108493

Ga0115675_1084935

F067720

MASTTYRHLGDVTEMYAAQEQFRDLTKTYHLGNVPVMVRNAGQLPQPFWLGAACGGGSGGAAR

Ga0115675_112986

Ga0115675_1129864

F068855

VPTVEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSE*

Ga0115675_114787

Ga0115675_1147873

F081354

LIFGQTKRALDLVRENQQSSAHNFVKDFSSFFPESRRRSPLKKGAVATIPLEYGKAEVQILFEPLQATISSMELPKNFENKKLPNTLRRLAFLP

Ga0115675_115589

Ga0115675_1155894

F076190

ITIFVKNVFTAASRVLGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008728: Human stool microbial communities from NIH, USA - visit 2, subject 763840445 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences