| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008696 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117987 | Gp0126516 | Ga0103927 |
| Sample Name | Planktonic microbial communities from coastal waters of California, USA - Canon-27 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Hawaii |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 4752080 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 23 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas veronii | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 3 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Avibacterium → Avibacterium paragallinarum | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Planktonic Microbial Communities From Coastal Waters Of California, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal water body → coastal sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000007 | Metagenome / Metatranscriptome | 8691 | Y |
| F010914 | Metagenome / Metatranscriptome | 297 | Y |
| F011139 | Metagenome / Metatranscriptome | 294 | Y |
| F011936 | Metagenome / Metatranscriptome | 285 | Y |
| F019483 | Metagenome / Metatranscriptome | 229 | Y |
| F019998 | Metagenome / Metatranscriptome | 226 | N |
| F032247 | Metagenome / Metatranscriptome | 180 | Y |
| F040068 | Metagenome / Metatranscriptome | 162 | N |
| F042865 | Metagenome / Metatranscriptome | 157 | N |
| F043390 | Metagenome / Metatranscriptome | 156 | N |
| F048174 | Metagenome / Metatranscriptome | 148 | Y |
| F051119 | Metagenome / Metatranscriptome | 144 | N |
| F054846 | Metagenome / Metatranscriptome | 139 | N |
| F055725 | Metagenome / Metatranscriptome | 138 | Y |
| F074867 | Metagenome / Metatranscriptome | 119 | N |
| F075867 | Metagenome / Metatranscriptome | 118 | N |
| F076005 | Metagenome / Metatranscriptome | 118 | N |
| F087089 | Metagenome / Metatranscriptome | 110 | N |
| F091607 | Metagenome / Metatranscriptome | 107 | N |
| F101275 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103927_10109 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas veronii | 1784 | Open in IMG/M |
| Ga0103927_10295 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri | 1265 | Open in IMG/M |
| Ga0103927_10378 | Not Available | 1161 | Open in IMG/M |
| Ga0103927_10590 | Not Available | 1007 | Open in IMG/M |
| Ga0103927_10702 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus | 955 | Open in IMG/M |
| Ga0103927_10706 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 954 | Open in IMG/M |
| Ga0103927_10950 | Not Available | 866 | Open in IMG/M |
| Ga0103927_11069 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 829 | Open in IMG/M |
| Ga0103927_11213 | Not Available | 795 | Open in IMG/M |
| Ga0103927_11642 | Not Available | 719 | Open in IMG/M |
| Ga0103927_11756 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 703 | Open in IMG/M |
| Ga0103927_11818 | Not Available | 694 | Open in IMG/M |
| Ga0103927_11999 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae | 671 | Open in IMG/M |
| Ga0103927_12017 | Not Available | 669 | Open in IMG/M |
| Ga0103927_12216 | Not Available | 649 | Open in IMG/M |
| Ga0103927_12475 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 627 | Open in IMG/M |
| Ga0103927_12957 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Avibacterium → Avibacterium paragallinarum | 590 | Open in IMG/M |
| Ga0103927_13078 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes | 582 | Open in IMG/M |
| Ga0103927_13158 | Not Available | 576 | Open in IMG/M |
| Ga0103927_13530 | Not Available | 553 | Open in IMG/M |
| Ga0103927_13731 | Not Available | 541 | Open in IMG/M |
| Ga0103927_14243 | Not Available | 515 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103927_10109 | Ga0103927_101092 | F087089 | LNNAKTIEFIENKANRELIKGIFGDTVLKKFDRVLVDAKRDRLGSTLGGVGGSQTYCRGATDKIMSQSIWKLDGAGASLGALLGTMLGGVGTMGGALGGAATAHAVKVLNMKQNALTSKAMLDPKYAAELLKKQIAPTQYKRGALESLKRNIAPSTIPAQDKN* |
| Ga0103927_10295 | Ga0103927_102951 | F055725 | MAFFNGCGIDIKTITELAAEGLSLNSMSKVTGHSKDGIKAALDRNNIPYIMGIRERFITVDGVLTSLGDACHAQGFRRESLYAWRDKRRLNEQDGFDAHIIYQQSKRTIDKPILTFKNATVIYKKERYTLNEISDKLKLNRQRFEVFMRQNRYAQNAFERYCYMRG |
| Ga0103927_10378 | Ga0103927_103782 | F040068 | MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQETPPIIREQMAAWPDPRPIGQPVFTPSPDYQYFIFNYFVLSVQSGSTTFDATASVGFNAPIASMAWSVDGVYVVSGLVPVVTMTQGLHDISVLLTDLYGNVHVH* |
| Ga0103927_10590 | Ga0103927_105902 | F048174 | MSDKGQLNNKDVQSHSNAVTGALNGEIARLKDDLDRLHRERDSFQRQCAVMAEENQQWEQDSKRLTWMIQNYGRVHFEFNANCYVTFIHKNEFKATLGSDDTRLEIDRAMEMCK* |
| Ga0103927_10702 | Ga0103927_107021 | F019998 | GQKRFDIPTVTNGVPAAYACLETDFRQNSLSVAASAGASSITLTDTVEYIAGDYIGIASDSNGLMWYKVNSVVGQVVNLYEVGTTTAASLDYAASADAIVVGFTTLAWQPLRIIEARRVDLSSDIEVPLMIVGKFDYERIPNKAMTSIPLWLYAQTMIAETQVFVWPPTAYANWAIGYSFERRYQDVDSGINSMDFPPEAYESLRYGLAARLGDEFPIDPQRQAMLEQKAAGYFTAMRQASSGNASVKFGVRG* |
| Ga0103927_10706 | Ga0103927_107063 | F074867 | MSNRGITDIMLNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDLSSGAFKTGDVVSIIQVCAVPANSRKFPSWWTRDGVGEAVISAGLVGITTSVTHFLAKALTAGTETDIKTVGSESDEKK* |
| Ga0103927_10950 | Ga0103927_109502 | F042865 | MSLRVPDYETFLAADDFNKRIWWQFMQSVVNDLPLNGNVAPENTVRANKSCLYVESTGGAAVLWFNPNGNGSATGWIVK* |
| Ga0103927_11069 | Ga0103927_110692 | F048174 | AVLGEIERLKDDLDRLHRERDAFSRQCSVMAEENAMWEQDSKRLTWMIQNYGRVHFEFNANCYVTFIWKNEFKSTLGSDDARVEIDRAMEMCK* |
| Ga0103927_11213 | Ga0103927_112132 | F010914 | MIYNILVEQNGKFVGSGETVECEFEETQAVIDELQ |
| Ga0103927_11642 | Ga0103927_116422 | F032247 | MLVWSIIDRVSSVLGQVAAMSPREAINNLETYGRHLGNGFIAINHDRSCELLLKNAVIVLEDARMIQRDAKIGAIKIINRDMPKVDYTTGL* |
| Ga0103927_11756 | Ga0103927_117561 | F011139 | MGLFLGLLAFLPLVYNLYNTFSKYVATIPMQNSILQTTTFIIFMLSLYCANSMLPCGRYYYEPEGGYVGNP* |
| Ga0103927_11818 | Ga0103927_118182 | F054846 | INEKMPRRGAEGRGQRRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL* |
| Ga0103927_11999 | Ga0103927_119992 | F051119 | MTIKEAFEQFDALRVANALGLEYGVVCKWRDRESIPAYWRVKFVNLMNHHNVAIKLHDLAGWIK* |
| Ga0103927_12017 | Ga0103927_120171 | F101275 | MILSGILGGLGGIPLITDVEPFKYEYRIGLETLVVRTLNQWVLHVGNLYLARTLTLKCLAWGVLLQRLNLNRLAGVCLNGGARGLIQPFT* |
| Ga0103927_12216 | Ga0103927_122162 | F075867 | MNPALKPSTKHFLQYDAATFEHEGFKTLNGRISQLALEPRFWSVSVKVITESYDGLKKIKDHFNFKTSERCKLSDLRDQVKREVLDKDDYLPVCTQCLVTARVMM* |
| Ga0103927_12475 | Ga0103927_124752 | F043390 | MIMSYQVKTEDLTKVISLTLTAEQLETIAGALEMYCIGLAEHNDPHLKYAADAQEAIIDVLESNFSVEA* |
| Ga0103927_12957 | Ga0103927_129572 | F011936 | LEQLHETRLQKLEQGHDMLSRDYSRLNDAIVKISESLMALVVVQEQNKSIMQCMEHQSTTIEKLDARIDAIELQMPQLVESRQWLMIGLGLIVTAVIVALIALVIK* |
| Ga0103927_13078 | Ga0103927_130782 | F091607 | MSLELQISELNATLKTLNENILLLLGSKEQYSKVECSPIEPVNLGQTEQQTFLPEVAKSDEYTREQLQSLCLEATKRNAANRDIIKAIMLSNFEARKTGDLADNQINLCYSMIAQATKDD |
| Ga0103927_13158 | Ga0103927_131581 | F076005 | HWYSTRALFFNDEVIMKHFKVRVQYANGIDFLFECDAVTGWQAGALARVAGRLAVMGGSMDVKETIVQEV* |
| Ga0103927_13530 | Ga0103927_135301 | F019483 | RQGYRRAGCVMANDTGTAEIDFGPFPGSNEASVAVTGQDAIGATSKAESWVMGDDSTTDHTASDHKYLPIFASFTCGNPVTATGFTIYGRSAHKLTGKYALRWVWSD* |
| Ga0103927_13731 | Ga0103927_137312 | F010914 | MIYNILTEQNGKFVDSGETVDCEFEETQAVIDELQLEHGCC |
| Ga0103927_14243 | Ga0103927_142432 | F076005 | LRLVLDKGFIFNDEVIMKHFKVRVQYLNGIDFLFECDAGRLAGMGGSMDVKETIVQEA* |
| Ga0103927_14388 | Ga0103927_143881 | F000007 | ECIGKADKTVSLLQVSSRREDPPPEDQLAKEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLSHLHEDEAPVETDKLKSFH* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |