| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008676 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0053015 | Ga0111520 |
| Sample Name | Human stool microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 114039564 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus | 1 |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042936 | Metagenome | 157 | N |
| F051936 | Metagenome | 143 | N |
| F078004 | Metagenome | 117 | N |
| F078822 | Metagenome | 116 | N |
| F088920 | Metagenome | 109 | Y |
| F092228 | Metagenome | 107 | N |
| F097493 | Metagenome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0111520_100133 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron | 118059 | Open in IMG/M |
| Ga0111520_100517 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 43582 | Open in IMG/M |
| Ga0111520_102881 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 4044 | Open in IMG/M |
| Ga0111520_103461 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron | 3299 | Open in IMG/M |
| Ga0111520_106056 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus | 1829 | Open in IMG/M |
| Ga0111520_108992 | Not Available | 1268 | Open in IMG/M |
| Ga0111520_116874 | Not Available | 690 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0111520_100133 | Ga0111520_10013372 | F051936 | FPLALRGKAFGFSVLQEHAVMTPVISIFFATLIIKYLSIHISIKK* |
| Ga0111520_100517 | Ga0111520_10051742 | F097493 | MKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMGVEIAKIQHTDITFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVGGE* |
| Ga0111520_102881 | Ga0111520_1028813 | F088920 | VSANLHHYPAFWAGLILHLILHFSQKVAIFVPKRAISLLFVPKLFFAGLSVLFPQTSPKISGQPSLYQPWLSPYCLFKD* |
| Ga0111520_103461 | Ga0111520_1034611 | F051936 | QEGTGQVLFFPLALRGKAFGFSVLQKHAVMTSVISIFFATLIIRYLSIHISIKK* |
| Ga0111520_106056 | Ga0111520_1060563 | F092228 | TLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADRCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS* |
| Ga0111520_108992 | Ga0111520_1089922 | F078822 | IFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL* |
| Ga0111520_115048 | Ga0111520_1150481 | F078004 | LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGTAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLI |
| Ga0111520_116874 | Ga0111520_1168741 | F042936 | LLRQGPFCCVRLMGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKAHFRSRLRGKG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |