NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008498

3300008498: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160178356 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008498 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053219 | Ga0115079
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 160178356 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size52048914
Sequencing Scaffolds12
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030786Metagenome184N
F036281Metagenome170N
F041827Metagenome159Y
F043235Metagenome156N
F043990Metagenome155N
F047508Metagenome149N
F051214Metagenome144N
F053092Metagenome141N
F064818Metagenome128N
F071329Metagenome122N
F074985Metagenome119N
F094006Metagenome106Y
F097525Metagenome104N
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0115079_100324All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip29542Open in IMG/M
Ga0115079_100979All Organisms → cellular organisms → Bacteria4970Open in IMG/M
Ga0115079_101340All Organisms → Viruses → Predicted Viral4010Open in IMG/M
Ga0115079_102872All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.2304Open in IMG/M
Ga0115079_104736All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1597Open in IMG/M
Ga0115079_105381All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1461Open in IMG/M
Ga0115079_106908Not Available1222Open in IMG/M
Ga0115079_109395All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales985Open in IMG/M
Ga0115079_111482All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium861Open in IMG/M
Ga0115079_114069Not Available753Open in IMG/M
Ga0115079_115849All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium695Open in IMG/M
Ga0115079_117429All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium652Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0115079_100324Ga0115079_1003246F105380MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRSPVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKGYAEFLASITKEQENVNTYEEFIEWTKNTNWLK*
Ga0115079_100979Ga0115079_1009794F041827MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMTIDGPHREASMDFEYDTYGRIVKERRFDHKSDYGETNITYQYDSQGRLVSSHAISTKNEENLGTGLPPTPLCSIERKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYDYHMETNTNTYKNYDYLEDITINEKSLYSNCKTWALGKTSRLHLSLR*
Ga0115079_101340Ga0115079_1013403F036281MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKIYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAELETGHWYTFRMSDAQKSKFTRYTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0115079_101340Ga0115079_1013404F074985MMELTDSGWYKTPRIVKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMEEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQVLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMYID*
Ga0115079_102872Ga0115079_1028721F043235MDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDTEVP
Ga0115079_104736Ga0115079_1047361F071329VKAPGSVKRARGSASETKGIMRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0115079_104736Ga0115079_1047362F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHWIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0115079_105381Ga0115079_1053812F094006MRGALQPAGPTGALYESAVCVEAHIGELQAGGIVCRCLFAFGGSNLLAVAKLRAEAPHAIDMYDIALCEPLSELFAEELEYAFNFGA*
Ga0115079_106908Ga0115079_1069081F047508VEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAMTDGGDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0115079_109395Ga0115079_1093951F097525MQQKKIMFKIQNAYQKIVFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTQVSECMLFSEVLGLLEWFEQISANKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFERE*
Ga0115079_111482Ga0115079_1114822F030786MKRTKIHKVVFQMLVVMIVTSSLQLLLKNGSAAKGGSATGTKKISLADITGGDDSETGVLKVKYFDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0115079_114069Ga0115079_1140691F053092MQSDQGLILCLTHALLVPGTLVLEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVCIVSYKLSFFRH
Ga0115079_115849Ga0115079_1158491F043990IFIFGVIVLGIVVYANHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDKLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDWNFGILIVDTTRKEICIYYQIL*
Ga0115079_117429Ga0115079_1174291F064818KLIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLCPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFNLIFGKKDYQQTAKQRIL
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