NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008260

3300008260: Human stool microbial communities from NIH, USA - visit 1, subject 159551223 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008260 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053144 | Ga0114292
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 159551223 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size180331707
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042910Metagenome157N
F043945Metagenome155N
F047126Metagenome150N
F050793Metagenome145N
F055775Metagenome138N
F058154Metagenome135N
F059982Metagenome133N
F067720Metagenome125Y
F068855Metagenome124N
F074899Metagenome / Metatranscriptome119N
F088914Metagenome109N
F099269Metagenome103N
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114292_100531All Organisms → cellular organisms → Bacteria33675Open in IMG/M
Ga0114292_101004All Organisms → cellular organisms → Bacteria22075Open in IMG/M
Ga0114292_102114All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales13055Open in IMG/M
Ga0114292_102146All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella12889Open in IMG/M
Ga0114292_103223All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales9294Open in IMG/M
Ga0114292_105361All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis5919Open in IMG/M
Ga0114292_106206All Organisms → cellular organisms → Bacteria5171Open in IMG/M
Ga0114292_106389All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5026Open in IMG/M
Ga0114292_108030All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae4023Open in IMG/M
Ga0114292_109133Not Available3544Open in IMG/M
Ga0114292_110582All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3077Open in IMG/M
Ga0114292_124766All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1244Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114292_100531Ga0114292_10053122F055775MAQIAQQDNLVIEVTTTADALDGDTKKKLIECIEGRTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINASSGAVVTIALN*
Ga0114292_101004Ga0114292_10100425F050793MRKQVLVPENVEMADIHAIQTRVKKHNLLTVVLLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYATQEGYEPMAVDFETMTDEEFQQFLDRSRI*
Ga0114292_102114Ga0114292_1021144F059982MTMRRMTRLLCLMLLFSLITFSCPLAEGTDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDEDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENASMDGAAVYVKEEATETASPEV*
Ga0114292_102146Ga0114292_1021464F099269MQKEASAAMRKPPFFVHGVLLSVQVGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0114292_103223Ga0114292_1032238F058154MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMMCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGTAIRQVMFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES*
Ga0114292_105361Ga0114292_1053612F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSPFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK*
Ga0114292_106206Ga0114292_1062065F043945MAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMDYDEETSEFGEPHGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE*
Ga0114292_106389Ga0114292_1063893F042910MLQLPQGGGLPGVHSHNGGLHLLRRQREQLSLRVRFLIEEYDIATRHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITALTISAAGKISFQGLTIAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC*
Ga0114292_108030Ga0114292_1080306F068855VPTVEAQGPQVRKSLAPQGLQAEKESEDVNVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW*
Ga0114292_109133Ga0114292_1091338F067720MASTTYRHLGDVTGMFAAQEQFRDITKMVCARFRGLTKTYHLGNVNKLVTFCHRFAVIGNMVRNAGQLPQPFWLGAACGGGSRGLFARA
Ga0114292_110582Ga0114292_1105824F074899MRGRKQWNKQAVTSSFLDKKPPKSLVQQGLEGSTAVGKDEVGSSNLPSSSNINRLNRLI*
Ga0114292_124766Ga0114292_1247665F047126TNIPQTQAEFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPHPLPPFAQRFIACFCSQTAAASQRKSAYILSSLESPCILCSLLRYFHILLKKLQKTC*
Ga0114292_132556Ga0114292_1325562F101356VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
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