| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008250 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118071 | Gp0127829 | Ga0105354 |
| Sample Name | Methane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM9B Gulf of Mexico |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 621505971 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 20 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae | 1 |
| All Organisms → cellular organisms → Archaea | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa | 1 |
| All Organisms → cellular organisms → Eukaryota | 2 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine cold seep biome → mesocosm → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 27.37 | Long. (o) | -90.57 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002753 | Metagenome / Metatranscriptome | 532 | Y |
| F012354 | Metagenome | 281 | Y |
| F013096 | Metagenome / Metatranscriptome | 274 | Y |
| F014192 | Metagenome | 265 | Y |
| F021319 | Metagenome | 219 | N |
| F035075 | Metagenome / Metatranscriptome | 173 | Y |
| F059128 | Metagenome / Metatranscriptome | 134 | Y |
| F060045 | Metagenome | 133 | Y |
| F061265 | Metagenome / Metatranscriptome | 132 | Y |
| F066858 | Metagenome / Metatranscriptome | 126 | N |
| F076187 | Metagenome | 118 | Y |
| F078840 | Metagenome | 116 | N |
| F090504 | Metagenome | 108 | N |
| F101338 | Metagenome | 102 | N |
| F101886 | Metagenome / Metatranscriptome | 102 | N |
| F103878 | Metagenome / Metatranscriptome | 101 | Y |
| F105357 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0105354_1126955 | Not Available | 1004 | Open in IMG/M |
| Ga0105354_1137994 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae | 951 | Open in IMG/M |
| Ga0105354_1142788 | Not Available | 930 | Open in IMG/M |
| Ga0105354_1154727 | All Organisms → cellular organisms → Archaea | 882 | Open in IMG/M |
| Ga0105354_1161823 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa | 857 | Open in IMG/M |
| Ga0105354_1168766 | Not Available | 834 | Open in IMG/M |
| Ga0105354_1184577 | Not Available | 786 | Open in IMG/M |
| Ga0105354_1188803 | Not Available | 774 | Open in IMG/M |
| Ga0105354_1209293 | All Organisms → cellular organisms → Eukaryota | 724 | Open in IMG/M |
| Ga0105354_1221185 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota | 699 | Open in IMG/M |
| Ga0105354_1223078 | Not Available | 695 | Open in IMG/M |
| Ga0105354_1285582 | Not Available | 594 | Open in IMG/M |
| Ga0105354_1312146 | Not Available | 561 | Open in IMG/M |
| Ga0105354_1339882 | All Organisms → cellular organisms → Archaea | 532 | Open in IMG/M |
| Ga0105354_1370733 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 504 | Open in IMG/M |
| Ga0105354_1373748 | All Organisms → cellular organisms → Eukaryota | 501 | Open in IMG/M |
| Ga0105354_1374325 | Not Available | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0105354_1126955 | Ga0105354_11269551 | F101338 | SLSRAVLGLVARAPAVYMPFFKRILCEGIISAVFVRLEIQVFVPYFTLLTLLTGIQ* |
| Ga0105354_1137994 | Ga0105354_11379942 | F035075 | LICVDDNAISVKYVNKKNQRSIWVIQKNIGDEEKWALKKEELEKKIRKHKSKPLYE* |
| Ga0105354_1140886 | Ga0105354_11408861 | F059128 | IVLVINAAKVEYARQLNHLNHLEVSFIFSELTTPKNLDRYVANEVTKITITMLLVI* |
| Ga0105354_1142788 | Ga0105354_11427884 | F012354 | NIPKPIPIEKNAIDNLNNVGLPVFLKPMYEIILITTPTNNPIRLRIISKKNSNYADSVTVLNKVSEQIF* |
| Ga0105354_1154727 | Ga0105354_11547272 | F066858 | IPAKKLAPAEKISRMRDASNGFLSIFLFRKIYDADAKRTTANKILKISGDRSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNKPATNPSGMSQILSINVLG* |
| Ga0105354_1161823 | Ga0105354_11618232 | F101886 | MLKKSAIIGFCLFNVVLFILIGIEVAAVTPERAMSEGVTQRIYASISTLDYIMAALWGAILYTILAAKTEHFLRVSWLYLGFYLCDIHFSHYMSMEMNDPYFTPGALFLVVIQAWFLYWAKNKINAANAAVSN* |
| Ga0105354_1168766 | Ga0105354_11687662 | F105357 | MDIDKVAVSTRLKRDEDRYLVLIDVDPTASTNDEFLKVFPKGYHGLFEFDNELDAKQYLIEVNKKLGLGKL* |
| Ga0105354_1184577 | Ga0105354_11845771 | F078840 | TYDLHSISNSEHFTVKVSPNPLIVKLDNIPTLIFLLDLVTSIVCESEMYSDNFLSKPLFGEVLSSTINIV* |
| Ga0105354_1188803 | Ga0105354_11888031 | F076187 | SIPDSISPALTVSTMICPDGLVSTATTHFFELINVEKFFENFNTSRNVKSFPKIPLIPEIDIFNASNLDTLFINSEWN* |
| Ga0105354_1208088 | Ga0105354_12080881 | F059128 | TTILAIKAAKTEYAIQLNHLKILDVSFILSELTTPKNLDKYVANEVTKITKIILLDISLI |
| Ga0105354_1209293 | Ga0105354_12092931 | F002753 | SEISSVKLTDSDRFTPAAFETESVKLTDSDKFTSAAFEIESVKLTDSDRFTPAVFEIESTSNTVSDRFTPADFAIESVNDTDSVRFTPADFAIESVNDTDSVRFTPAAFDIESVNDTDSDRFTPAAFAIESVKLTDSDRFTLDAFETESVKLNVSEIETLCALVTVHAGSYTAVVKLTDSVRFTLADFDIESVNDTDSDRFTPAVSEIESVKLTDSERFTPAASEIESVKLTDSDRFTLD |
| Ga0105354_1221185 | Ga0105354_12211853 | F012354 | PKPIPIAKKAIVSRNSVGLPVFLNPIYEIIPIIIPTEKPIRFRIISNKNSNVANLLAVLNKV* |
| Ga0105354_1223078 | Ga0105354_12230782 | F090504 | MEIFIILIIIFGLILPYWAGVMAKRKGKSFVLWCILQLLFFFPIVLIAFHSPIEKKK* |
| Ga0105354_1285582 | Ga0105354_12855822 | F060045 | MISNYSKPIRVQESVNIWKNLVFVNAIWVVPLVVLAAKKTTMMHTNVSAVKCVLSR* |
| Ga0105354_1312146 | Ga0105354_13121462 | F061265 | MSLDWDLIWKILQVVALLIIAREIDKRIRKRKNK* |
| Ga0105354_1339882 | Ga0105354_13398822 | F013096 | VVGDSAVGLSTLSHTNTVAVYEPEALGVHDNAGLIDCPAVKEPVIHANDTV |
| Ga0105354_1349760 | Ga0105354_13497601 | F103878 | FVRTKSIPINAVTDADDKKVLFSSPYINCIKNGISMNAPNIIRSTPIAKKTVLLLFIFENGGYLKIIEIQHNKTLLYLYFTYEI* |
| Ga0105354_1370733 | Ga0105354_13707331 | F014192 | KNNKVENVKKFIIVKLYGAKPSIVTAPSKKGVKNITKNLLLSKAIKLKSLLLNN* |
| Ga0105354_1373748 | Ga0105354_13737481 | F002753 | EIESAKLTVSVRFTPAVFEIESVNNTVSVRFTPAVFEIESAKLTVSVRFTPAVFEIESVNNTVSDRFTPAVFQIESVNNTVSDRFTPATFDIESVKISDSDRFTPADFAIESVKLTDSERFTPATFDIESVNDTDSDRFTPADFDVSSVNDTDSDRFTPAALDVSS |
| Ga0105354_1374325 | Ga0105354_13743251 | F021319 | VGAARFIEIPRATTISGTKISPPPTPKRLDIIPAKKLAPAEKTSKMRDVSNGFLSIFLFRKMYDADAKRTSANKILKISGERSEDMNAPSTVPGTAINPSFQPSESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNV |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |