NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008100

3300008100: Human stool microbial communities from NIH, USA - visit 2, subject 158944319 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008100 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053101 | Ga0114174
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 158944319 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size94952779
Sequencing Scaffolds8
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055775Metagenome138N
F056682Metagenome137Y
F068855Metagenome124N
F073656Metagenome120N
F075481Metagenome119N
F080673Metagenome115N
F085718Metagenome111N
F089590Metagenome109N
F090484Metagenome108N
F092228Metagenome107N
F099406Metagenome103N
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114174_100006Not Available144047Open in IMG/M
Ga0114174_100007All Organisms → Viruses → Duplodnaviria → Heunggongvirae128755Open in IMG/M
Ga0114174_100255All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes36072Open in IMG/M
Ga0114174_100552All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium23303Open in IMG/M
Ga0114174_102245All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1587318Open in IMG/M
Ga0114174_109196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1794Open in IMG/M
Ga0114174_110519All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1544Open in IMG/M
Ga0114174_127936Not Available531Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114174_100006Ga0114174_100006102F099406MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSDMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMISTRVDSTYLDLSIFPSTSGTLDEDSYAKVIDAYNNRITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYIVAQDKTYRAIANTATLFNTMLSYLKFMANTPNVVTTLASLPTDAHNIIANVASATNLSMSVSSEYAGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA*
Ga0114174_100006Ga0114174_10000683F090484MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTLVARRYRVNGIQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIKEAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIENMDISVQSLPNINITVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0114174_100007Ga0114174_100007121F075481MRLRISLKAVFCLGLSLFLSSCGSRRQVSEAFIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK*
Ga0114174_100007Ga0114174_100007122F089590MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDTFADAYLVKVFKAVFKRINVFKMFGFSKNIPDETFDDIRRIADDEVKDKS*
Ga0114174_100255Ga0114174_1002552F073656MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH*
Ga0114174_100552Ga0114174_10055214F080673MDEIMKLQDEALLYLRDNITKDEAYYILTTDKDMIEILISDKKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRGQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRVDYDKVDFMFVYFMARML*
Ga0114174_100552Ga0114174_1005527F085718MIRISVEVMRKSDVRSISGITSVLQGYMGISFISRRQRKVVRNNISIGGDKMVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGDRPMVVMIENNNVDDYIILRYNETGRRNIDGQSSLDLMLSVKEREPELWVVVISYIDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV*
Ga0114174_102245Ga0114174_1022453F068855MVPTISRCPSSSVPTVEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSNLHYHVNVSAALSEGGATW*
Ga0114174_109196Ga0114174_1091961F092228MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNTTVNLPSNGSLINDNLFYINGDKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKIANYVNEIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPVKIAEKCDCDELLATKNFLYCYTINYIL
Ga0114174_110519Ga0114174_1105194F056682VAEKSDKQNTMKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKIYENQEVL*
Ga0114174_115892Ga0114174_1158921F101356MPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0114174_127936Ga0114174_1279361F055775LVIEVATTAATLDGDTKKKLIECIEGGTITDVILVTKEDEKKISHARVVSWLVDTTGNSPKYTIDIINANSGAVKAIELN*
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