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Sample 3300007989
3300007989: Microbial communities of Eelgrass leaves from Netarts Bay, Oregon, USA.Combined Assembly of Gp0128395, Gp0128394
Overview
| Basic Information |
| IMG/M Taxon OID | 3300007989 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0118131 | Gp0128394 | Ga0108968 |
| Sample Name | Microbial communities of Eelgrass leaves from Netarts Bay, Oregon, USA.Combined Assembly of Gp0128395, Gp0128394 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Oregon State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 1058129880 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Microbial Communities Of Marine Eelgrass |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information |
| Location | Netarts Bay, Oregon, USA |
| Coordinates | Lat. (o) | 45.394187 | Long. (o) | -123.939629 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F012457 | Metagenome | 280 | Y |
| F028441 | Metagenome / Metatranscriptome | 191 | Y |
| F075465 | Metagenome / Metatranscriptome | 119 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0108968_10423016 | Not Available | 500 | Open in IMG/M |
| Ga0108968_10455869 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium | 1209 | Open in IMG/M |
| Ga0108968_12705160 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris | 599 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0108968_10423016 | Ga0108968_104230161 | F012457 | MMIKDLEMSKDLDRDALTAVRGGRNSIEQGGVYAPVANVGGGFSFGSPTNIVSAPVNAPSAVLNDNDLQLKLANKTANVLGSLGTEIWQ* |
| Ga0108968_10455869 | Ga0108968_104558692 | F028441 | MIHDMTLKQLIKLENKSKEIWVVSPTLHYDTENKDFSEIVSVNLGEKTKYRYIVPATKTVLKNIKLYKKRYKLTSADVKANFLVLPPSEFNPFLEETAIYDASGACIACAAPATEEGNDVIRFSAKSSKAMAAAFKALWKKYKFTTP* |
| Ga0108968_12705160 | Ga0108968_127051601 | F075465 | MKQDGDWAATQLSGDPLTLYALIEKTILAQTEDQYPFATVYEQEVGLYSFRQENMSNPQWYERFNTKVDVGTAIGVTRQHKVLLEFVAQEVHTTSFDDLNDDQKESVREDAEERYLAYVFFKQSGKQHLNCKEDIQNEFTKGNNRYPKTRPQVLHLLDKYT |
