Sample 3300007775

3300007775: Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG

Overview

Basic Information
IMG/M Taxon OID	3300007775 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125949 \| Ga0102953
Sample Name	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	719889604
Sequencing Scaffolds	72
Novel Protein Genes	77
Associated Families	72

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Poly30	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia sulfidoxydans	1
Not Available	24
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4965	Long. (^o)	-122.1329	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001057	Metagenome / Metatranscriptome	791	Y
F001784	Metagenome / Metatranscriptome	635	Y
F002422	Metagenome / Metatranscriptome	560	Y
F003344	Metagenome / Metatranscriptome	493	Y
F003875	Metagenome / Metatranscriptome	464	Y
F005628	Metagenome / Metatranscriptome	394	Y
F005789	Metagenome / Metatranscriptome	390	Y
F007483	Metagenome / Metatranscriptome	350	Y
F008498	Metagenome / Metatranscriptome	332	Y
F008968	Metagenome / Metatranscriptome	325	Y
F009024	Metagenome / Metatranscriptome	324	Y
F009579	Metagenome / Metatranscriptome	316	Y
F010008	Metagenome / Metatranscriptome	310	Y
F010527	Metagenome	302	Y
F011397	Metagenome / Metatranscriptome	291	Y
F014125	Metagenome / Metatranscriptome	265	Y
F015265	Metagenome / Metatranscriptome	256	Y
F015489	Metagenome / Metatranscriptome	254	Y
F015635	Metagenome / Metatranscriptome	253	Y
F016569	Metagenome / Metatranscriptome	246	Y
F017250	Metagenome / Metatranscriptome	242	Y
F018541	Metagenome / Metatranscriptome	234	Y
F019694	Metagenome / Metatranscriptome	228	Y
F020568	Metagenome / Metatranscriptome	223	Y
F021782	Metagenome / Metatranscriptome	217	Y
F021828	Metagenome / Metatranscriptome	217	Y
F022996	Metagenome	212	Y
F026738	Metagenome / Metatranscriptome	197	Y
F027361	Metagenome / Metatranscriptome	195	Y
F029285	Metagenome / Metatranscriptome	189	Y
F030290	Metagenome / Metatranscriptome	186	Y
F036211	Metagenome / Metatranscriptome	170	Y
F036690	Metagenome / Metatranscriptome	169	Y
F037370	Metagenome / Metatranscriptome	168	Y
F038836	Metagenome / Metatranscriptome	165	Y
F040249	Metagenome	162	Y
F040720	Metagenome	161	Y
F040819	Metagenome	161	Y
F041403	Metagenome / Metatranscriptome	160	Y
F043249	Metagenome / Metatranscriptome	156	Y
F047069	Metagenome / Metatranscriptome	150	Y
F047593	Metagenome	149	Y
F050600	Metagenome / Metatranscriptome	145	Y
F051509	Metagenome / Metatranscriptome	144	Y
F055431	Metagenome	138	Y
F055875	Metagenome / Metatranscriptome	138	Y
F057605	Metagenome	136	Y
F059048	Metagenome / Metatranscriptome	134	Y
F062881	Metagenome / Metatranscriptome	130	Y
F064172	Metagenome / Metatranscriptome	129	Y
F064933	Metagenome / Metatranscriptome	128	Y
F065641	Metagenome / Metatranscriptome	127	Y
F067235	Metagenome / Metatranscriptome	126	Y
F071270	Metagenome / Metatranscriptome	122	Y
F072879	Metagenome / Metatranscriptome	121	Y
F073771	Metagenome / Metatranscriptome	120	Y
F073800	Metagenome	120	Y
F074094	Metagenome	120	Y
F074459	Metagenome / Metatranscriptome	119	Y
F079725	Metagenome	115	Y
F083203	Metagenome	113	Y
F085143	Metagenome	111	Y
F085674	Metagenome / Metatranscriptome	111	Y
F086281	Metagenome	111	Y
F088925	Metagenome / Metatranscriptome	109	Y
F089875	Metagenome	108	Y
F090930	Metagenome / Metatranscriptome	108	Y
F091749	Metagenome / Metatranscriptome	107	Y
F092498	Metagenome / Metatranscriptome	107	Y
F095984	Metagenome / Metatranscriptome	105	Y
F099485	Metagenome / Metatranscriptome	103	Y
F104731	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102953_1003044	All Organisms → cellular organisms → Bacteria	9590	Open in IMG/M
Ga0102953_1008144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5259	Open in IMG/M
Ga0102953_1008278	All Organisms → cellular organisms → Bacteria	5203	Open in IMG/M
Ga0102953_1008450	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5141	Open in IMG/M
Ga0102953_1008586	All Organisms → cellular organisms → Bacteria	5093	Open in IMG/M
Ga0102953_1010303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4574	Open in IMG/M
Ga0102953_1010595	All Organisms → cellular organisms → Bacteria	4504	Open in IMG/M
Ga0102953_1012181	All Organisms → cellular organisms → Bacteria → Proteobacteria	4162	Open in IMG/M
Ga0102953_1016431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3516	Open in IMG/M
Ga0102953_1018433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3298	Open in IMG/M
Ga0102953_1019874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3164	Open in IMG/M
Ga0102953_1020680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3098	Open in IMG/M
Ga0102953_1022643	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Poly30	2943	Open in IMG/M
Ga0102953_1026608	All Organisms → cellular organisms → Bacteria	2694	Open in IMG/M
Ga0102953_1027932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2625	Open in IMG/M
Ga0102953_1036888	All Organisms → cellular organisms → Bacteria	2257	Open in IMG/M
Ga0102953_1041043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2130	Open in IMG/M
Ga0102953_1043710	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
Ga0102953_1045570	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2012	Open in IMG/M
Ga0102953_1046264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia sulfidoxydans	1995	Open in IMG/M
Ga0102953_1046711	Not Available	1984	Open in IMG/M
Ga0102953_1049094	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
Ga0102953_1054321	Not Available	1825	Open in IMG/M
Ga0102953_1067742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1612	Open in IMG/M
Ga0102953_1068946	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1596	Open in IMG/M
Ga0102953_1087543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1395	Open in IMG/M
Ga0102953_1092931	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1349	Open in IMG/M
Ga0102953_1096029	Not Available	1324	Open in IMG/M
Ga0102953_1109798	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1227	Open in IMG/M
Ga0102953_1116381	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1186	Open in IMG/M
Ga0102953_1117899	Not Available	1177	Open in IMG/M
Ga0102953_1126410	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
Ga0102953_1127164	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1127	Open in IMG/M
Ga0102953_1136513	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1082	Open in IMG/M
Ga0102953_1137296	All Organisms → Viruses → Predicted Viral	1078	Open in IMG/M
Ga0102953_1153681	Not Available	1010	Open in IMG/M
Ga0102953_1158094	Not Available	993	Open in IMG/M
Ga0102953_1158528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	992	Open in IMG/M
Ga0102953_1161959	Not Available	979	Open in IMG/M
Ga0102953_1174964	Not Available	936	Open in IMG/M
Ga0102953_1176984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	930	Open in IMG/M
Ga0102953_1179805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	921	Open in IMG/M
Ga0102953_1207183	Not Available	847	Open in IMG/M
Ga0102953_1221968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	813	Open in IMG/M
Ga0102953_1225434	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	805	Open in IMG/M
Ga0102953_1243860	Not Available	769	Open in IMG/M
Ga0102953_1244274	Not Available	768	Open in IMG/M
Ga0102953_1248122	Not Available	761	Open in IMG/M
Ga0102953_1265243	All Organisms → cellular organisms → Bacteria → Proteobacteria	731	Open in IMG/M
Ga0102953_1297718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	683	Open in IMG/M
Ga0102953_1302516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	676	Open in IMG/M
Ga0102953_1325312	Not Available	648	Open in IMG/M
Ga0102953_1325814	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
Ga0102953_1331114	Not Available	641	Open in IMG/M
Ga0102953_1338585	Not Available	633	Open in IMG/M
Ga0102953_1345193	Not Available	626	Open in IMG/M
Ga0102953_1348601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	622	Open in IMG/M
Ga0102953_1354031	Not Available	616	Open in IMG/M
Ga0102953_1368770	Not Available	602	Open in IMG/M
Ga0102953_1383616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
Ga0102953_1387564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	584	Open in IMG/M
Ga0102953_1397563	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	576	Open in IMG/M
Ga0102953_1400084	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
Ga0102953_1420362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	557	Open in IMG/M
Ga0102953_1432739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	548	Open in IMG/M
Ga0102953_1439895	Not Available	542	Open in IMG/M
Ga0102953_1447943	Not Available	537	Open in IMG/M
Ga0102953_1450695	Not Available	535	Open in IMG/M
Ga0102953_1452912	Not Available	533	Open in IMG/M
Ga0102953_1456847	Not Available	531	Open in IMG/M
Ga0102953_1472337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	520	Open in IMG/M
Ga0102953_1489079	Not Available	510	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102953_1003044	Ga0102953_10030444	F085674	MSVSNASEAGWPCDRLRRGPGESLLLTIALMAVAVAGFTAVTATLTPPGGAWHPAMRIRQRAIVSTAFNVMFESLAPSIAFLWIGDERATVVVASAGVAVYATGIVIWRGRQFMRAGGNRTPSAIVLFTLGPTATLLFWANALVVGSVAIYALALCIQLTVAVVSFYSLVSATQS*
Ga0102953_1008144	Ga0102953_10081443	F019694	MREKLPIFALAAAVLVIVVGGAFAAGYLIGRMIL*
Ga0102953_1008278	Ga0102953_10082782	F088925	MGRVGLRHWKEIPVQERKCSKCGSVNVYKNTSNNWHQDGVVLQMLAVGSFHDLFQTEAFLCLDCRNLDIQVAETSTMYGKQKPLVDTIQASNNWVKA*
Ga0102953_1008450	Ga0102953_10084505	F026738	MGTTRAAPLAGVYQKVTLGATSKILGGGKYSISGMTRNTMETSEFGDDVDVFEFTNANSGTITLEDVTYDPTDPEQNTLRACLQNKTKLIYSETSGIRFWLDSTSYMTIGTSGSILIVQAGKVEADRSGIAKTSFQGQVSGAFMMIV*
Ga0102953_1008586	Ga0102953_10085862	F071270	METDEMADAYSLAKQHLDAGIAEAAENNIDLNAYGQALVWKLLERYKEAGRTGADIVSEMQYTLDNLDDDGTFHVSRN*
Ga0102953_1010303	Ga0102953_10103035	F015635	MQASSRSSFQPAEAGAILAGAVGICAGGGALVGWAAGATRYGVLGGVVAGLPAGVFAVYRRFKGYFS*
Ga0102953_1010595	Ga0102953_10105952	F104731	MPEPASLLNYLTRNLKTVMKLTLVDAFSRFGAKPASRLGSLSAMAADGAMVLNCLPAHFGHPARGVLRYETKLSTAQAGTKIVTTLGEDLTRARERDLPVRMVVSIQEREKTGNKGCRYHVRPDLVGKVVEFDGDRFVVDFTRFQPARPAVTASRRK*
Ga0102953_1012181	Ga0102953_10121812	F003875	MAWRKTGLYRSAEEILIMTCDVCERDVGFEDGRRPQEHFRVSRHPNRGAIDDQEAPAIICSRECLRAFAADVTGPDRASSPQRSGGAVGKPDRGG*
Ga0102953_1016431	Ga0102953_10164315	F017250	VSHPPLSTTPTAEKPALSEAQRAERLRLLARRLRSPEGLDRDALKHIERLTGDER*
Ga0102953_1018433	Ga0102953_10184333	F040249	MQLVLHDPVYTERLASFLRSVGQRTIMSTPDHLEIDGARDESSQLELEIYLRVWRVLYPDAEVDVAV*
Ga0102953_1019874	Ga0102953_10198742	F001784	MGDVIRVEFGTEREWERTRAQWADGLSAIGALFGDDEQLMRAKAECVYQVLRQMVEDVPTVRILAHLPEDLPAEQVELLTGAIREAALKGIETSMTHSVRVVMAAVYDLCTSKLREHPS*
Ga0102953_1020680	Ga0102953_10206803	F036211	MVAQKSEAIRRAGWTLESDLDPVDEQLRRRRWRILRVALPQGHGLDPVPARITTPEQFVGWLVSRLSAQALMNYFEDLEEIAKQTCDLELLRLARKYLRR*
Ga0102953_1021639	Ga0102953_10216393	F037370	MWEVLRWFAVFVLALLLIVAGLFWLMGRPLPIPNF*
Ga0102953_1022643	Ga0102953_10226431	F047069	SYQCVVPPVRRTGTLPFAGTAGACDGSFDQDLNAVWCPSCPKAGANPGAGALVQIQLWYRDPLSTSNQTTSLSDALEFAVLP*
Ga0102953_1026608	Ga0102953_10266083	F055431	MKIITQKQMKLAMEHLAGLLKKDGAVQTLTVQEWLDTAQFRPAQFTTSLGALEILGLLGFGDEMVHVGV*
Ga0102953_1027932	Ga0102953_10279322	F038836	MEDGWTIDIDAAGDPADVDEHFDDRVAEFEHALEPWSGAVEASSDHFGARFSYDTDAVNPVQVLEEGLDIFHDAAVAAGLQPWQVVRCEILTYAEDDARGGEDDEE*
Ga0102953_1036888	Ga0102953_10368882	F001057	MKTTIALDASNRIVLSREVRRAAGIPRRQKLLVSATPGRIVLEMEANPAGRVVKRGKLKVWTGAVPSTSLEEAVESSRHYTR*
Ga0102953_1041043	Ga0102953_10410434	F005789	MGSGDPIPLALDSMRGPIVDARIAYPEVLHVKIKDSAGGLWQFATQDAEWSPSDPAELVGRSVVGADIDAETGELRCKLSDGSVLGVKPAEREAEDDPLNWELITPGGVVLEFGPGVRWQIGSADSRAS*
Ga0102953_1043710	Ga0102953_10437102	F062881	MNTSTTTAADLLAQIARIPLMERGKLSSYRPKHRPADAGPYHKLQTWERGKNHTRHVRSEQVPLLEEALAGYARFCALTEQYAQLVIEETRQQLAGVGEKKRPGPRPSSSRRRRRKSGD*
Ga0102953_1045570	Ga0102953_10455704	F003344	MTPRTLRQRRGLPPSARDYLAKRLDGARDLYLVALALGERDDDGSVFGRMIREARIHFAAVIEEARVAGLDTEAIAGMLGDQDVGASIRPEIWLRVQEILVEARMKHQRRPAD*
Ga0102953_1046264	Ga0102953_10462641	F083203	MSTEVAIPEAQSERFEASLEAEHAAERDLMMSLIKSIAISMPIMIAIFVLMTAIAISDKADWWVWLGLGVGLGAVAALLLGSLAGATLNAHKLDEVDRITAGLEPEAA*
Ga0102953_1046711	Ga0102953_10467112	F029285	MKNQADYSKYKCPFAHVEKDCGHELNGPEGYENCESVWCPCGFRGPVFYLDPGELKLELIDGSGGS*
Ga0102953_1049094	Ga0102953_10490942	F067235	VETVTTRQEDGTVDIQERAPAAAIPDEQRLEELYGTGIRRATLGLARFSSDTIRLRGVEPAILRFGPSIDSRRTILGGIVARRPGGTIAWRAGSEHSSVAVEGFAPLLRGPLWRLETSFHDLVGRRFLARVTREAP*
Ga0102953_1054321	Ga0102953_10543212	F002422	MQNMETLSLRATRVVAAPTARQGGGGSIEKTEQAKAGV*
Ga0102953_1067742	Ga0102953_10677423	F064933	MEMPSAKPRIQITVDDELDAALKELGGGKSRSRAVHDLALRGAETIRAERSRAQEAQAHLRRIATGEDDRYDFAVSAQLHAAR*
Ga0102953_1068946	Ga0102953_10689462	F099485	MKQKIMQNWQHSPSKTQVAIKPVKAVSKSLRQTKSPILTNEDLMGISWVLFEEKD*
Ga0102953_1087543	Ga0102953_10875432	F086281	MAAPKPSVRSTTLSRQERRPQDLDEQHFGEIDVAMLYIEEARTRAERAAEALRRGGADEHLVEALEKAQDELSDVARRLRQGTLFAVPKEQLSL*
Ga0102953_1092931	Ga0102953_10929313	F027361	MAAATQAQKNLQAAMREALRIQDRFVAEPLFAETGRGHLKSEGVSTVSKIKANLRRKTAKTKAK*
Ga0102953_1096029	Ga0102953_10960292	F095984	VPNRNRGIVASAVGLLILAFNVVDAANRGASAANVVAIACGAFMLFWGFAMVARSGGPPPT*
Ga0102953_1109798	Ga0102953_11097983	F065641	MNFTDPQLQKCYESNLAEAGSFPGEERQVRALIATHEVFLMFEGAHSSRVHETIEHLLLPGLRPELRRWYQRTDAEKDLSAVVLRDHLSQLAGEKLESTTNTPDNNVEHGQSSRDI*
Ga0102953_1116381	Ga0102953_11163813	F015265	MYPVHITKKPKLIEKNAIVNLNNVGLPVFLNPIDAIIPMDSPTKNPIRFNIFSNKNSNDA
Ga0102953_1117899	Ga0102953_11178992	F051509	MYSTTTQHNGMAAVAVARAHYVGGVANDLMDAQGSWSIRCTVPATFHKPRPRRSQVTFS*
Ga0102953_1117899	Ga0102953_11178993	F074094	FFRSLAEQPESYHNPLAREPLPPDPRGERLVGVAPGNYGHAMIVAFAAVCIVIGAYLPWISGTIGLAKFSRSGFDDGLGLGYSIGAGALACSALLSVRMRAFRWLTIVLSFAITGFVVRDVLHSYDAMQQMNRAASVDANVGWGLWIMIVGGAIAMIGAVRLSEDEKIG*
Ga0102953_1123464	Ga0102953_11234641	F037370	MWEVLRWMIVFIAALLLIVAGIYWVLGRPLPIPSF*
Ga0102953_1126410	Ga0102953_11264103	F010008	TMIAGPVACVYQAYEDGALVATGRLMLDNLPQAGEELRLNGRVHVVREVAFSGGSYVLSLEPRA*
Ga0102953_1127164	Ga0102953_11271642	F010527	MSQNAKRKEATKQAVLVELENFRQGRHARYQTLVGRFARCPKLIRAAALFAAAVDANARAYNRTPLDAPPGSLPPIS*
Ga0102953_1136513	Ga0102953_11365131	F074459	SQDLNARWQAKPNQNPGAGANAQVQLWCRDPQSTSNQATAFSDALEIFVGP*
Ga0102953_1137296	Ga0102953_11372964	F005789	MATAVTLDASPLNVLRSMRGSIVDARIAYPEVLHVEIKDSAGELWQLATQDAEWSPSDPTELVGRSVDDADIDAETGELRCKLSDGSVLDVKPAAREAEDDPPNWELITPGGVVLEFGPGVRWQIGSADSRAS*
Ga0102953_1153681	Ga0102953_11536812	F089875	MFPIWLILGIVMVLLGIFNKPILQFLGLKSMSEVFTVANLKRSSRAIEQIGRWLVITLGLIFFVLGLGETLPNEVSNKIIFSLLGLAGSMFLVIIGIMVANWKAK*
Ga0102953_1158094	Ga0102953_11580942	F085143	MSRIDDGHSTTIAFANYPSVLFWEKEVTPPGVSGGGANDTTTMQNSVWRTMAPKQLKTLSNSSVVVAYDPDVYTDVVAMVNENQLITVTFPDASTLAFWGWLDEFTPQRVVEGQQPTAEVTIIPSNQNAAGAETAPVVG*
Ga0102953_1158528	Ga0102953_11585282	F072879	MFPDPHFTVRPEGLPRPDRRPLPRAGEIRLRVKRTTNRERA*
Ga0102953_1161959	Ga0102953_11619592	F047069	VPPVKRAGLLSGTGTVGQCDGNFSQDLNALWFTTPAKNPGAGAVVQAQLWYRDPFNTSNQKTSFSDAIEFAVGP*
Ga0102953_1174964	Ga0102953_11749641	F041403	MAIREQKIRGRWRLLVGSVTLGVAALGLSSCGFPSTTASTNEAPSGTNIVECRSGTITNGDVQTSSLFVAKVP
Ga0102953_1176984	Ga0102953_11769843	F030290	RVKRSSDPRCHVGTRGHVTLFASYNGVRSDSVRFRFRGGCRAQDRLYHGAQVDNQVPPR*
Ga0102953_1179805	Ga0102953_11798051	F021828	MKYVVISRLAPGVDNARKALEVFQKAGLPPGTESLWASTDGKTFINIIDTDTPDMAASSTYAPFFEKTKVIQVVPVDDSWMQAIQNAQSNWG*
Ga0102953_1207183	Ga0102953_12071832	F090930	VNVVVLVATDATAAPLGETARALETDDTRAAVFVGDVTTAEGRTALQEFVAELFDPGPS*
Ga0102953_1221968	Ga0102953_12219682	F036690	VPGVADILGYMRTVSRGSPVDERWSVLRMVLSQVRHGNVAEGSPLTLQDVMASEEYRDLMTAKVSVGDRAPDFDLARMDGGGSVQLGALLAER
Ga0102953_1225434	Ga0102953_12254341	F043249	MPKIVGTRERVHQPFYDSLLRVDGSGDLRQGNVGVFGAVQSRMQLFVRQGADVAVSNLTTGGFFPSDQTFVTLAVRVWTYFRFNTESQRTLVNGQVTTTGPVGLAPGVTADRIMRVHKLYHQAENQLFWQFVAGDKPQLTTFTAYTPAAGGLDGFFADSRLPRANNGIPSSNALMRLARPILVPPRQGFQVVSIASP
Ga0102953_1243860	Ga0102953_12438601	F015489	VHRHGGYERYADPEGTLKERIQRYLCRFCRLTLSVLLPHRLPYRPIRAQRLQGEFDQRAGIQTQGLDPPPRTVEAGCLQRAWSALTARVATLQAAFGQLIESTVSEGASLWASLRQSFDSVPKMLAFLSEHHRISLLGNYRCLRPPNRTSA*
Ga0102953_1244274	Ga0102953_12442742	F022996	METIVKTNISKMKSDIKKMVELQKFYKNQRKTENLVGERKMSPSEATWKHTTNREDLRIMYAAYGLARGKSFSQTENKYPEDNHPLKNHQHSIDRILKSYEIKVEVETEAAE*
Ga0102953_1248122	Ga0102953_12481221	F064172	MGLLDKVKETAQKGADLAKEGVKAGQDKIDEQKVRRKVEDLKQELGGVVYDQKSGTTPEGVDAEVEIARIVAELNAAMAELPDEADEPTADDADPE*
Ga0102953_1265243	Ga0102953_12652431	F009024	MRNHNSDYYRDEAARYKKLAQAATDPAQKQEFLELAEACEDVADSIDDLRASG*
Ga0102953_1297718	Ga0102953_12977183	F014125	IGKRDGRTPRAQPEFTLVGDDRIIGSTVWLDEEGRRIERYQVLTIRDGKIVDMQGCETKRQAERFARQAGKAS*
Ga0102953_1302516	Ga0102953_13025162	F079725	RNLVRFALTSGARVEAEQALDWVREIDLVVHCDRPRSFDQGERRFLPRVIDQIVEVQGVEGTRLTLNPLFDSAGPHLRWLGADPIFLDQLERAGYQPPA*
Ga0102953_1325312	Ga0102953_13253122	F055875	LAAVSHGCIRIPMDIAQFFHKLVHVSQAGGTPIYIRGRVRGT*
Ga0102953_1325814	Ga0102953_13258142	F040819	MTKAQGVYEKVEALVATGAKKADAFRQVADEVGQPFNSIRGAYYTHTRSIGGTPGSTRKREQTPADPIEAATSVLTRALEAIDDQVEAAKTRVEQAEAAYKELRE
Ga0102953_1331114	Ga0102953_13311141	F009579	MSGIELVLAFLAGVVMGGALDRFVLPLLVDAWIDQVRRHWR*
Ga0102953_1338585	Ga0102953_13385851	F008498	MPTVSYKHQPGIEATHGNVPLAGNSHIYTVAKVLWPESIETFLATLFIGRTLHVCCGKSKLGDVRLDAFDPDVDIQCDAADMRPFVVDDGFETVLCDPPYNGKFQWNHDLLSELARVSSRRIIFQHWFIPATPMGRYKKTQEKFGLTAAYVWQPRTYFGRAQIVSVFDTDNPIEGKGDSCT*
Ga0102953_1345193	Ga0102953_13451932	F020568	WHTALSAASRQTLAVRWRTTSNALRAAQLEYRSLYSASEIDIRALRKAAQRIHDLEQLRNALERDLGGSPA*
Ga0102953_1348601	Ga0102953_13486012	F050600	MAILRPEEEARVRELFAELERPVELLVALGPEEMPLPGARDVDFGAEAVKIAEGLAELGELVTCRVEEEPDGFLRFPAIAIRPEGRDAGVRYDGLPWGYELGSLIGGVLEAGK
Ga0102953_1354031	Ga0102953_13540311	F059048	VMTVWVVVVVLGIGAAAAAYAARRHTDEVEPSVREFTEFRDAISRQVDGVHGDTRTLRQHLDRQPVGPPTTAVPPRNHDRSSPTGPGTERRGR*
Ga0102953_1368770	Ga0102953_13687701	F022996	METIEKVNIAKIKADIKSMVEKQKFYKNQRKTERLVGKREISPSDATYKHFTNREDLRAMYAAYGLARGKSFSQVENKYPEENHPLNKYQGTIDRYLKKYTEKVKVEVEVQE*
Ga0102953_1383616	Ga0102953_13836161	F005628	MLLDTIWNRLLNRLLREERGDGIISWVVLAVGLAAAAATVIALLRPAITSAAQSIVNMISGG*
Ga0102953_1383616	Ga0102953_13836162	F021782	LELAGRDCQGPLAAELERALSLARRHQNVSEREALVRVARESGEPTFTRFAELLAAKESPYVDFLRQQAREARGEQARYLERAAERAYLAMHAPVAPLLAVLVLLLAYGFLHFLAQTT*
Ga0102953_1387564	Ga0102953_13875641	F047593	VNENRELNGYRVRLRVVEEYDVALLAESSEDAMAQAEAEVRGGRAFEAIQDSWPEEIVSVEATAVEPYPELE*
Ga0102953_1397563	Ga0102953_13975632	F047069	YQCVAPPVVRGSLLAGTGTPGACDGTLAQDLNALWCPSCPKPQKNPGAGAIVQAQLWYRDPTNTSNQTTSLSDAIEFAVGP*
Ga0102953_1400084	Ga0102953_14000841	F016569	GKVIMYMDKELYRIYWKLVHNRAGEYFYNAMCAYHWTRDPEATWSAVSPNLVVGVNDKTNRAALGGRYSEQFIEHDFPEDYFTLQTLTHLSD*
Ga0102953_1420362	Ga0102953_14203621	F018541	MYTPEMQSFWVDFPVNEDQYAKLKLKFRRRRNYYEIQNTPPELRVRTFCTFGGEDNKVISIEVRGDIEAYQNTLKVMHDWIVENLGEF*
Ga0102953_1432739	Ga0102953_14327391	F092498	AAAREDAVALARDLRLGAVMPGFNWGGWFVLVVDEHGKKIDEVPVADEVGER*
Ga0102953_1439895	Ga0102953_14398952	F040720	MKIYQLQTAKEFYNQVKGNHTTEELMQMYARHVATSFAVECTNEALGNKMESSNALHSKIDKMYNSIEW*
Ga0102953_1447943	Ga0102953_14479431	F057605	MTSLASAPGWKARFLADDEYEEPRVVTLAAWALVEDDDGETEIVGVVQRSADADGGRLGLADEVDGFDGYTFTGLATRASGS*
Ga0102953_1450695	Ga0102953_14506951	F073771	MNKNIAVVLLLVLAAGCSSNPRDEAYAPPPMDPTRTVSEQVCTRTITVEGG
Ga0102953_1452912	Ga0102953_14529122	F091749	APNSYYFYTLLGVVWIMIKVDENSKAQSWELEITCKDRKYLNAVVKAILKYGMMEFEVNTVDCHSNADGWEGSYTVLIWCSWFSNLGDIAKDLKKIERKLENYT*
Ga0102953_1456847	Ga0102953_14568471	F011397	MKDFELLKRTYPVSEIDRYCDGYIYLLDNTTIEQRKEWKINLRNLQRVIKKNEKYIYQVGKDNGEFKVMSMCFSNYAIIRKFIFGIDDE*
Ga0102953_1472337	Ga0102953_14723372	F007483	MSGLTLIAYALLWATLMRALLVRARVLPPTCARCGLQLERRALGDRICRCHADDEPV*
Ga0102953_1489079	Ga0102953_14890791	F008968	MIVAIPAELIASPLKSGREPDEADRSALVIGGTEKIRTGERLLFVKVVAVTDAVVTRDGQVRAEGRPCEHATLGPLEDWLDAQAGPGVIGGIAERAVLDGKYVKGKYRRLLSAE
Ga0102953_1497027	Ga0102953_14970272	F073800	MKLRRRLIVAMAVFLVIGLGVADVVTYSAVRSFLYG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007775: Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences