Sample 3300007619

Overview

Basic Information
IMG/M Taxon OID	3300007619 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125945 \| Ga0102947
Sample Name	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D2_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	612966947
Sequencing Scaffolds	54
Novel Protein Genes	57
Associated Families	48

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	2
All Organisms → cellular organisms → Bacteria	10
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	1
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
Not Available	13
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Poly30	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria → Candidatus Peribacteria → Candidatus Peribacterales → Candidatus Peribacteraceae → unclassified Candidatus Peribacteraceae → Candidatus Peribacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4962	Long. (^o)	-122.1329	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000338	Metagenome / Metatranscriptome	1271	Y
F000701	Metagenome / Metatranscriptome	930	Y
F001127	Metagenome / Metatranscriptome	769	Y
F001139	Metagenome / Metatranscriptome	767	Y
F001186	Metagenome / Metatranscriptome	754	Y
F001366	Metagenome / Metatranscriptome	713	Y
F001874	Metagenome	623	Y
F003470	Metagenome / Metatranscriptome	485	Y
F003590	Metagenome / Metatranscriptome	478	Y
F003930	Metagenome / Metatranscriptome	461	Y
F003989	Metagenome / Metatranscriptome	458	Y
F004210	Metagenome / Metatranscriptome	448	Y
F006571	Metagenome / Metatranscriptome	370	Y
F007003	Metagenome / Metatranscriptome	360	Y
F009848	Metagenome / Metatranscriptome	312	Y
F011210	Metagenome / Metatranscriptome	293	Y
F011880	Metagenome / Metatranscriptome	286	Y
F012724	Metagenome / Metatranscriptome	278	Y
F015265	Metagenome / Metatranscriptome	256	Y
F020359	Metagenome / Metatranscriptome	224	Y
F020374	Metagenome	224	Y
F024410	Metagenome / Metatranscriptome	206	Y
F029294	Metagenome	189	Y
F029446	Metagenome / Metatranscriptome	188	Y
F030371	Metagenome / Metatranscriptome	185	Y
F031688	Metagenome / Metatranscriptome	182	Y
F032662	Metagenome / Metatranscriptome	179	Y
F032709	Metagenome / Metatranscriptome	179	Y
F033719	Metagenome	176	Y
F041302	Metagenome	160	Y
F045445	Metagenome / Metatranscriptome	153	Y
F047069	Metagenome / Metatranscriptome	150	Y
F049090	Metagenome / Metatranscriptome	147	Y
F049640	Metagenome / Metatranscriptome	146	Y
F055037	Metagenome / Metatranscriptome	139	Y
F055778	Metagenome / Metatranscriptome	138	Y
F066517	Metagenome	126	Y
F074459	Metagenome / Metatranscriptome	119	Y
F077150	Metagenome / Metatranscriptome	117	Y
F077325	Metagenome	117	Y
F080059	Metagenome / Metatranscriptome	115	Y
F082716	Metagenome	113	Y
F083827	Metagenome / Metatranscriptome	112	Y
F093897	Metagenome	106	Y
F094435	Metagenome / Metatranscriptome	106	Y
F099485	Metagenome / Metatranscriptome	103	Y
F103749	Metagenome	101	Y
F105217	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102947_1000046	All Organisms → cellular organisms → Archaea	42135	Open in IMG/M
Ga0102947_1000720	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	11602	Open in IMG/M
Ga0102947_1000768	All Organisms → cellular organisms → Bacteria	11278	Open in IMG/M
Ga0102947_1000816	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	10945	Open in IMG/M
Ga0102947_1001038	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	9413	Open in IMG/M
Ga0102947_1001083	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	9218	Open in IMG/M
Ga0102947_1001187	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	8757	Open in IMG/M
Ga0102947_1002144	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	6257	Open in IMG/M
Ga0102947_1003763	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	4496	Open in IMG/M
Ga0102947_1009103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2799	Open in IMG/M
Ga0102947_1010392	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	2634	Open in IMG/M
Ga0102947_1011344	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	2526	Open in IMG/M
Ga0102947_1013922	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	2294	Open in IMG/M
Ga0102947_1027853	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1696	Open in IMG/M
Ga0102947_1027888	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1695	Open in IMG/M
Ga0102947_1043942	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
Ga0102947_1062926	All Organisms → cellular organisms → Bacteria	1196	Open in IMG/M
Ga0102947_1070931	Not Available	1136	Open in IMG/M
Ga0102947_1073238	Not Available	1120	Open in IMG/M
Ga0102947_1081907	All Organisms → cellular organisms → Archaea	1067	Open in IMG/M
Ga0102947_1100384	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
Ga0102947_1111999	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	931	Open in IMG/M
Ga0102947_1119534	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
Ga0102947_1127872	Not Available	878	Open in IMG/M
Ga0102947_1147594	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
Ga0102947_1153510	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
Ga0102947_1175294	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	764	Open in IMG/M
Ga0102947_1205672	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	713	Open in IMG/M
Ga0102947_1215340	Not Available	699	Open in IMG/M
Ga0102947_1216342	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
Ga0102947_1224966	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	686	Open in IMG/M
Ga0102947_1236581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	671	Open in IMG/M
Ga0102947_1238615	Not Available	669	Open in IMG/M
Ga0102947_1247258	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	658	Open in IMG/M
Ga0102947_1252758	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
Ga0102947_1253797	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	651	Open in IMG/M
Ga0102947_1262321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	642	Open in IMG/M
Ga0102947_1291514	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Poly30	614	Open in IMG/M
Ga0102947_1301103	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
Ga0102947_1305703	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	601	Open in IMG/M
Ga0102947_1306653	Not Available	601	Open in IMG/M
Ga0102947_1314715	Not Available	594	Open in IMG/M
Ga0102947_1316912	Not Available	592	Open in IMG/M
Ga0102947_1318880	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria → Candidatus Peribacteria → Candidatus Peribacterales → Candidatus Peribacteraceae → unclassified Candidatus Peribacteraceae → Candidatus Peribacteraceae bacterium	591	Open in IMG/M
Ga0102947_1326088	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	585	Open in IMG/M
Ga0102947_1343491	Not Available	573	Open in IMG/M
Ga0102947_1347324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	570	Open in IMG/M
Ga0102947_1352701	Not Available	566	Open in IMG/M
Ga0102947_1368964	Not Available	556	Open in IMG/M
Ga0102947_1374480	Not Available	552	Open in IMG/M
Ga0102947_1390553	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
Ga0102947_1392244	Not Available	542	Open in IMG/M
Ga0102947_1405804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
Ga0102947_1417816	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	528	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102947_1000046	Ga0102947_100004647	F082716	MPVTFIIAPVVLISLVYIVFITSNDMIEEKEFIVSLSCPELREYTQSQIIDSKLYFGHEVFLSYAEERYDTSC*
Ga0102947_1000720	Ga0102947_10007204	F105217	MASGLNTNNEKNTLIDSVQYRLFYAEINLEKIPTAIPLDIFPKDKISNEIAIDGFLFYANAALDLIFTEINKKLDLGLSLNQTHPSEIMSALSKKDSPEHIRILEEFEKYFQKPIHEEKVISDKEFNEGLNRYGFDVIGFHAEYETRGQVKYQHFWNRASSRLWEIRNQQNLESYDSLLKNAGKRGKDEPRNYLRVKLSEDNSLSVYWDSAHYENPKRYFSNILYLVKDFIDKILETLKARHS*
Ga0102947_1000768	Ga0102947_100076813	F031688	MKTYIIYVKGYEKGVIKAASHNAAEKKAWKKFSDYPREQISVAYTEV*
Ga0102947_1000816	Ga0102947_10008167	F105217	LEKGVDTIKEKNELVDSIQFRLFYAEINLDKIPVAIPLDIFPKDKISSEIAMDGFLFYANGALDLIFTEINKKLDLGLALNQINPSDIVQALEKKNSDETKKIIEVFQKNFQKPVHEEKIITDKEFNDGLNRYGYDVIGFHAEYENRDQVKYQHFWNRASSRLWEIRNQENLESYDSLLKNAGQKGTDKPRNHLRVKLASDDRPAVYWDSAHYENPKRYFTNILFLVKKFIDKILEILKPLYLPDSKTP*
Ga0102947_1001038	Ga0102947_10010389	F077325	LSKKGNWTEKDEATIKAIIVNMINQKQMFRNLGEKGELPSSFNVQNSREFVLGIFTGIVINLFANYWVGEHEAGLLPEDLDFLYHKIALSNELILVGLFE*
Ga0102947_1001083	Ga0102947_10010835	F093897	MKLGFYISIGVAIGALVVGFVLLNDIQQEKDAKTVWIQKIPTQCNDVWNAEYSEYYEINPEMKEISGEESKAILETIIKNHYENQGISILDLNLEVDYYDGVRCEACSCLGWDRLSIQISQNDLDGIPVSEGWEVLN*
Ga0102947_1001187	Ga0102947_100118711	F093897	MKPGFYISMGIAIAALSVGFILLNDVQQEKETQAIWLQRTPTQCNDVWQVEFDEFFETNPEIKEIPKEKMKEILESIIKNHYEKQGIKILDLNLELDVYEGVRCEACNCLGWDRLSIKIPKSQFELVNKSEGWISLN*
Ga0102947_1002144	Ga0102947_10021441	F082716	VAPILLISLTFVVVITYEDMIDEKELIVSLSCPELREYTENQIIESKLYYGSEVYLSYAEERYHSLC*
Ga0102947_1003763	Ga0102947_10037637	F077325	MSGKGNWTEKDEATIMAIIVNMINQKEMLKDLGGKSELQNSFKIENPKEYVLGLFSGIVINLFANYWVGEHEAGLRPEDLSYLYHKISESSDLITKGLFE*
Ga0102947_1009103	Ga0102947_10091038	F094435	MNFNWALLPAACLLLFPITQIAAQEQAVLGQGNVSCDAWLSDRRDNSAQASGRIAWIVGYITAFNQ
Ga0102947_1010392	Ga0102947_10103921	F049640	MARHPAIKLELLPHERAALLKWNYTPEVRAQLEACASSDNIETITITSVDANWLASDLTHAIVKRGCRDQDVIDLSERLEYVDQSGDGSLDGWYY*
Ga0102947_1011344	Ga0102947_10113443	F001186	MTPQHSHTTRLSDYIAFVLPWAHGHQLTGITDFVSVIIEKQTACQAQLARCFDNQEAAAKRLYRLLHNERLDPRVLAEAVLLQEIHQIPDHGKIRLDIDWEIENQQYLLAISLIIGRCALPICWRDYDASALKGRMKRYEMAVIR
Ga0102947_1013922	Ga0102947_10139224	F029446	GGNMLLWLILATGIVAGMLPGLLKLDKVFSIPNIVVGVSGALLGAFLGFGDAPLLLKYPVLNERTLMIAAAILAVFVKSAVTRKPT*
Ga0102947_1027853	Ga0102947_10278532	F003470	MVRIADACYCRRTTAQTQAQELKQNLSKVMRSFGRSCRGQGKVFVKLVRQTEQQLLDVGETISTLARQAQASLEQTTTLSETQRAWFNEHLTTAMRHHEQIRQQSKQLTQGKKLAHFKVVNAYDPTIAPIIKGKSNCPAQFGRKPGIMSEPASGYIFANLTPKGNPSDESYVLPLIDKVEQAIGRAQQGPKRSIHSLAGDLGVNDPVLRQALHERGILSVGIPKTVEPINAHPSAQEVLDILNEADLNRKRTPHQVHLACASGFSRPVVESHIAALLSRGAGSVRYKGMEGAVVQQGMTVMSYNGAVLVRIRQQKLTKRAQKFRRLLGLKPPKVNEINQEKN*
Ga0102947_1027888	Ga0102947_10278882	F006571	MKTDFHCTPEACPEASLRVQLVQIEVSPAHPLLVLKRALPWEAITEVMTRHWREHGKNVDGGPGLPWDVSLYAPLVVLMIIKSFDSRQMETYLAENVVARVFIGRHHEIEAQIRDHSNIARAYAALGKAGIEEVTHLVIHQAHGFGFVDEGVMSSDTTAQELPIGYPNEPGILRGLAQRCGRALRRLKQRGIQGLE
Ga0102947_1043942	Ga0102947_10439423	F003930	IAGDVRSDDPADVRPPADFAPDLARYTSRGGMLWIFAL*
Ga0102947_1062926	Ga0102947_10629262	F004210	MKCDLCTDDDGKGIHYHAFIDGKHYWVCEKCKRERNLDSEHTDE*
Ga0102947_1070931	Ga0102947_10709312	F001127	MDHPHIEQYQARDGGVTLHTWTDMQGDKKENFYITGMPGAPVPAWFRTVLRKKHLADIANFPNHLS*
Ga0102947_1073238	Ga0102947_10732381	F011880	STHYTPKFRPFDMLGIPNQSLVFLENENHRIGAECVVGVQDAFHRYVDCDMVYFQFCGNTTVETEFGIYEMEPGEVMLVPGGISHRSIGRNQSLRYFCQTHEGVDYVMDEEKYTSQQSYVVKRIGGPDWGKLERENAHTNGRVVEKMHFWDDGPRDETRVERDYDSLVGVATIGRGKEGSGIRRLRAFDHFTAVAGKGGEQGLIALMESANMRVRTYNMQDEQFAFHRALRSEEVRIQFRGDALDLSEFENVAVSPGEITIIPLGISHSVISVPPDAKDFLRLNFYSKVRWQVPIDPTRHLFDSRFEVATTVHKEADWWKAAAAG*
Ga0102947_1081907	Ga0102947_10819071	F099485	MKQQTTHNWQHSPSKTQVASNPVKAVSKSLHKAKISALASDDLMGLSWVLFEEKY*
Ga0102947_1100384	Ga0102947_11003843	F033719	VSHRTSAETLENGIPNARLVVLQGERHSYFFANPDAAHQAIRDFLGQP*
Ga0102947_1111999	Ga0102947_11119993	F007003	GYDYWQKFKKEWKLHIIPTERTEEFRRFFDHLNVETSTGIAWGVTGQKEIYMFVNDTKNQFILRSNVMPLGHELLHAIYQDQVGTYHIRRKYDAPEGRAGTSGAAATVIVHDNWYGTKITKKFWINWALIWLPITYPYIPLWKAKQQYAI*
Ga0102947_1119534	Ga0102947_11195342	F032709	TQAEIAANAAEAPGMDDEVPPFVKAFFMHTWVEALYSPPANNNPNPDWTSPLLDPENNRVWCTYCHISGQINFENIPKQRLPMTEIYENDHEFMADLMRKWVARLNSDEYFASAKLARPVDCLTCHETHPDPSIP*
Ga0102947_1127872	Ga0102947_11278721	F020374	PLNTTDLDHLSITMPNAEAAAKFYGSIFDPQVFHERTGVQRYYVRLGAAYLAFGPREGVTPFIDHIASTVVDFVENDFPDPEIQGQIADAGLVAPGGVLPMLADPDGLRLQLVNATHGLFDTLMPGGRVTIEPPVLVPLGLDHIMLTVTDPEASGRHYRTLFGPEESRDPDLGRVWFRVGRSRLGLESATPGRSAGFSGYSIQVAGFDREEAIRRLGNLGVQTTPGAEDGTLRFLDLHNLQVEVTPV*
Ga0102947_1131565	Ga0102947_11315653	F047069	SGFTLTTAPLEGDKDGLYFFGSNGRQANPWGSGTSLQCVVTPVRRGGLLLGTGTPGACDGSTSQDLNALWCPTCPKPLKNPGAGAVTQAQFWYRDPFNTSNQTTSLSNAIEFTTGP*
Ga0102947_1147594	Ga0102947_11475941	F000338	MAAVRFIEVQARPTEFLDLTSLTPNEFEQLIPPFEAAS*
Ga0102947_1153510	Ga0102947_11535102	F080059	ADFDHQVDHIMTRDPYQFFLRSSEITGLYPVDGFWNSDHAGVFSRLRFRR*
Ga0102947_1175294	Ga0102947_11752941	F003590	APGLLARDYAKFPNKVLWKLAAKVREVVSAGSVVRIEDDLGTHLTATYDGSRLYGMQFRAGDPPGRCHFPWGRCGVFNGSGKADGEVYISCVQGVAGQLPAPMRWKIRNSEVVEAEGGELAEECRQLFDKVPGSNRLVEIMFGYHPKASIQYGIMDPMHWELISKMPWVGLGTDRKNPTFRHVDGSVMNGRLYIDDRIIVHEQGMLDRSFLHDPEVLEAAAEYGDPYQVLAPVSHEAHGSGTLL*
Ga0102947_1181998	Ga0102947_11819981	F083827	VGAFFSVRSRGSFHGRWRARTAKVTDDIGRFDDESR*
Ga0102947_1205672	Ga0102947_12056721	F047069	PPVKRAGILAGSGTGGVCDGTITQDLNALWCPSCPKPARNPGAGAIVQAQLWYRDPLNTSNQSTSMSQAIEFRVEP*
Ga0102947_1215243	Ga0102947_12152432	F041302	MAWNISLFPEEEQAHVQGSLLESLPQELGGEDVGVLLGTIDTLIARKHLLYPNVREYIVTHDLSLANHAITLTVGTAPVPETIQRRL*
Ga0102947_1215340	Ga0102947_12153402	F055778	MLSKVDFPEPELPTMSTNSPFSIENETLSSAFTLFSPSP*
Ga0102947_1216342	Ga0102947_12163422	F024410	MVEVKNPITEANEHPEVRHHALWKTDLAYFWTINCEANLQDDMHYHENDDHIFMVLEGECTV
Ga0102947_1224966	Ga0102947_12249661	F074459	GLCDGAFAQDLNALWCPACPKPGHNPGAGAVVQAQLWYRDPQNTSNQTTGLSDAVEFTVTP*
Ga0102947_1236581	Ga0102947_12365812	F066517	MPPTERLDEVARLLALGYLRLRARRREEKSNDPNHLRKFGLDFVAEGSVCDTD
Ga0102947_1238615	Ga0102947_12386151	F029294	MRQETGETRDAIIEDDEKVIQQIIDANKNRKDLYWIVLFATPSKVNVDGKPTLMKHIKPYFTKPSPKVGMITGEVNNRDGKILWDVNMPQKPFDFNALGAYGAKSCDELVVETTSIPGAYLTK*
Ga0102947_1247258	Ga0102947_12472582	F015265	MYPDQMTKNPKLIEENAIVNLNNVGLPVFLNPIYDIMPIASPTKNPTKLRIFSNKNSNDE
Ga0102947_1252758	Ga0102947_12527582	F011210	MIRHYASRGLQLLGLIVVGESMLIYFGDMGPMMYTAMAGIALFYAGWMIGGRNQG*
Ga0102947_1253797	Ga0102947_12537972	F049090	MASPVGQFPDLNRRMIRAPVNPLDKSTVVSILPKEIIEIKHTIQPGKFVIPPGSEDKPSLLVVGPSSWWRDIDEEQPLLEIPHSSVQIAESIVIDYCNGILGY
Ga0102947_1262321	Ga0102947_12623212	F055037	MEAAALPSKAGPVADRIAIWPVDDGRYGLDATFQGASGYERAERHADGLRRETVRHSLRQELGGGWTLRFGPLTAADVNVALGAFVR*
Ga0102947_1291514	Ga0102947_12915142	F074459	GTGAPGTCEGSASQDLTARWTAAPASNPGAGATVQLSFWYRDPQNTSNQTTSFSDALEFGVCP*
Ga0102947_1301103	Ga0102947_13011032	F001366	RTDDYLYLPVGVTTRTRVASRALSVTLEYDYLIHGWQKTRQSELGGGMVPATPTAPAFTIDGFTDVSFDQASGWALRASAEYQVNRRWSVEPYYVRWSVDDSTVNTITATFTVNGVAANQQLGFYEPRNTTDEFGVKLGFRF*
Ga0102947_1305703	Ga0102947_13057031	F020359	HLIRTFSIFTEASMAVEKRAKQKTPEEFWSKVLAAPKVKRILEKRGFDPEAFRRDYEADSSRGPRTPRRPSKQQMDAVEAFQRTGDFEALKTSLGTESAAVANSALRRVVQFKALGGVKTVRRRAGSD*
Ga0102947_1306653	Ga0102947_13066531	F074459	QDLNARWCPSCPKPAHNPGGGTTMQAQLWYRDPQNTSNQTTSMSNAIEFTVCN*
Ga0102947_1314715	Ga0102947_13147152	F012724	IEATDGMEITIGDREPVTATLYQMTGHTPGSLGMIVPVRYQGTEHPILIVTAGNHFNNVNAFIGGYEHIWDIAIERRVENVMQAHPNTNMNLLARTKYVHENYPPAVNPLLYGAERTERYINIVRSCSRAWMVLSGMWEE*
Ga0102947_1316912	Ga0102947_13169121	F009848	MDRTWSVEIEGKKHSIEVDYGRDGSLTGKLVVDGNEVQTWKNSQQLDVPKEITFDVEGKPAVLRAKGLFRPRLEFFFGGELIREA*
Ga0102947_1318880	Ga0102947_13188801	F030371	IQGQIAKALAANSVYMNVIGGGMFPSGVSDTQRSVVQMQAAPGDSFAVPQFVCETDLCGQNGHQDLTDTIDFVLRLEGFRGRGPNICVKNGFSAFKSSYTMAEDSLKKLVVQYINADIRAQLYLRSASKFVANANYDFNSLFTGGSECDLGVKFAPLAPTGPLSFKALHYIARYLKEVLLAEWFSTDKGMGHFRFI
Ga0102947_1326088	Ga0102947_13260881	F003989	LAQSEKEAFGAPDHPVLAVQHPIGTVKIEEVNQKAEAAFDKLVDILLAPEAARANVA*
Ga0102947_1343491	Ga0102947_13434911	F077150	PNTARRYLVMSKPVQYMHLDYEAYKALEEQMRAFDETTHKSATGFYHKSIRLRLPDITIEFHGPLVGGYGHADE*
Ga0102947_1347324	Ga0102947_13473241	F032662	PILMLLKTDDRNHPLEMQERFIGAYRKSGGAIEVHTFDGLPEHGMEPSPDEPETMRAIDAIVAFVGRQANVRGVAAPA*
Ga0102947_1352701	Ga0102947_13527011	F001874	MSNEITLKIEEGLYEDFLEEIQSKNYGGINKFLGEPWFHKSDAEMEAEAEKKVQEFMDRNS*
Ga0102947_1368964	Ga0102947_13689642	F001127	MDSYLEQYETKAESVTLHTWTEEQGAKKDHFYITGMPGTPIPGWFRKVLHQKYLADIVDFPNTPSRFYD*
Ga0102947_1374480	Ga0102947_13744801	F001127	MGHDHIEQYAAEEGGVTLHTWTDVQGAKKENFYITGMPGAPVPTWFRTVLRKKDLADIANFPNHPS*
Ga0102947_1390553	Ga0102947_13905531	F045445	ADIMAASQGKPVPGEGFKRPAEYADYCKVGPTRVPFLNFPDAQIDRAKKRAAHWMEMNKKYRPLVEAERGRTAA*
Ga0102947_1392244	Ga0102947_13922441	F001139	KQQKEKVMRIFKNDLTHYFLREHDQLPASYLASCKKFFKELSDKQQAASVKPQALKNKLHKPGTRVKNRFNRKV*
Ga0102947_1405804	Ga0102947_14058041	F000701	MWEATPAKLEAVSNMCVFIYVGENDRYRWHAEMMREVEYINAIGGTARYTVEEGQPHRIETLVGPNAFRLFDDFEEARDGCAE*
Ga0102947_1417816	Ga0102947_14178161	F103749	MGKYLVVDADGHCQEPDTGLAQWMPQELKHLAPNRVTDSSGYSHLMVEGRLAANRRWGGGPDRGKIFADHIETSRPGM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007619: Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D2_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences