Sample 3300007596

Basic Information
IMG/M Taxon OID	3300007596 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0125910 \| Ga0102802
Sample Name	Marine microbial communities from the Southern Atlantic ocean - KN S19 DCM_B metaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300007596 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114292 | Gp0125910 | Ga0102802

Sample Name

Marine microbial communities from the Southern Atlantic ocean - KN S19 DCM_B metaT (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	64515886
Sequencing Scaffolds	20
Novel Protein Genes	21
Associated Families	16

Dataset Contents

Total Genome Size

64515886

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic Ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Southern Atlantic Ocean

Coordinates

Lat. (^o)

-28.2362

Long. (^o)

-38.4949

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003423	Metagenome / Metatranscriptome	487	Y
F005911	Metagenome / Metatranscriptome	386	Y
F007527	Metagenome / Metatranscriptome	349	Y
F009492	Metagenome / Metatranscriptome	317	Y
F009689	Metagenome / Metatranscriptome	314	Y
F014386	Metagenome / Metatranscriptome	263	Y
F017306	Metagenome / Metatranscriptome	241	Y
F018182	Metagenome / Metatranscriptome	236	N
F019484	Metagenome / Metatranscriptome	229	Y
F023863	Metagenome / Metatranscriptome	208	N
F035474	Metagenome / Metatranscriptome	172	Y
F041437	Metagenome / Metatranscriptome	160	Y
F046422	Metagenome / Metatranscriptome	151	Y
F074905	Metagenome / Metatranscriptome	119	Y
F078612	Metagenome / Metatranscriptome	116	N
F088935	Metagenome / Metatranscriptome	109	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102802_1001976	Not Available	656	Open in IMG/M
Ga0102802_1004164	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	822	Open in IMG/M
Ga0102802_1004243	Not Available	1747	Open in IMG/M
Ga0102802_1104065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
Ga0102802_1124105	Not Available	516	Open in IMG/M
Ga0102802_1126520	Not Available	531	Open in IMG/M
Ga0102802_1145449	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	756	Open in IMG/M
Ga0102802_1148627	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	602	Open in IMG/M
Ga0102802_1154561	Not Available	680	Open in IMG/M
Ga0102802_1155955	Not Available	649	Open in IMG/M
Ga0102802_1164448	Not Available	650	Open in IMG/M
Ga0102802_1173866	Not Available	853	Open in IMG/M
Ga0102802_1176944	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	607	Open in IMG/M
Ga0102802_1177580	Not Available	669	Open in IMG/M
Ga0102802_1182733	Not Available	658	Open in IMG/M
Ga0102802_1192125	Not Available	625	Open in IMG/M
Ga0102802_1192643	Not Available	760	Open in IMG/M
Ga0102802_1198194	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	702	Open in IMG/M
Ga0102802_1201767	Not Available	656	Open in IMG/M
Ga0102802_1206531	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	1103	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102802_1001976	Ga0102802_10019762	F007527	VFTRGISKGLNASMPFGGQTFPTSIVGAILAAKKAQKKAKKNIISDTINKIIP*
Ga0102802_1004164	Ga0102802_10041641	F023863	MAMLALSSLSAAQNPWVNRRKNKDKDAPVAADPSSGDTDFSKLNDMVKNLQQAGAAGGAGGEDMFAGMGDMWESLMDSPEMEEMLANPELLKATIKNNPLINAIPGASEQVEALLQSDAFNDPAQLKQAMRQGVDAMKAVGSEFGSQLGAQMKLAQQNPEAFKAQMEAMMSQLAGGPEQGRALMEAAKGLWDGSADPAQLEALSKLPGMEALADPEAMKRQMAELQKMMG
Ga0102802_1004243	Ga0102802_10042432	F019484	FFYFLTILGGSLKKIAKKITTNVPISKKVYTNASII*
Ga0102802_1104065	Ga0102802_11040651	F003423	KQMRETIDRKDESIKKLEAELASYKDKEIDNVFSSLGLSTDKGFGKALKQVYDGPINTESIAQFAKDEYGYESTGQVQEVTQPAPEPIVQDDARERVAALDANSVSDVPLSQNEELAKALQSASVKDSLRARLAIMEQDKQNK*
Ga0102802_1104065	Ga0102802_11040652	F074905	MAAITLTGDTLYSQKINNFTGELFRVGGQRTPFLSAT
Ga0102802_1124105	Ga0102802_11241051	F046422	MKEMNDSDWIYTAGNSEQYPNHIVHRRKEDSLAIWPYNPLTGEIGYDDPPYQPSEMLYRPDVE*
Ga0102802_1126520	Ga0102802_11265201	F035474	QTFNFKIMSKTLFSQSINLCDDYLGFEWSQGVRTSMFDVYRRANDLDPNLAIYHYGGDRFEVRSMNYDDSKGCIIGDQVDLGTFDNIYDAQDCAEEYLKDLLLAIGV*
Ga0102802_1145449	Ga0102802_11454491	F014386	MTDATINTPAAAAERPTFKCAVNEGLKSTELPLLRLGGTVQENPHMRAFWASTCSFFIAFVGWFALAPVAIDVMYSIGECENQRKPPESNLKHKPYVTFVNIKTKKPYCVHGKTDDAKDCKEIPAAEADITACEDASSEDCTFAKANKYDLSTLPKCVCGKGTGCKTIIANAGIASVGSTVFVRISLGTLLERFGPVNVQSSLLTFGGFWVAVSSQINASWNYYLCRFLIGCAE
Ga0102802_1148627	Ga0102802_11486271	F017306	VTGLRAEPTGGGRATVRWEWSENSFDLASPGASFERDVILDPLAWAGPVRKTPKTKPVAPAPKVEVSQELRAADVAVKSEWRQNCCDDEWEIHVSHAPTGSRLVWKGTSTAEHQDVKILRHAEAEGMVRIDFVYYCGENGSNSASDRSLFVKLGAKGIEWVPKHVCSGRLYDGPCSGTL*
Ga0102802_1154561	Ga0102802_11545611	F005911	KGGRKTMSLKTRLLTMLNSKKGSALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARLGSGTEADIESPVSELFHNANFITLKEMVKKAVIIVSDDPTATARSGVDTAYDADNSGVLIKFADADGTVIADGAGGDTIVADVHLFVNLAGTADAVTNDPYTAGEPFYYILMDDATAGFNDADKRTIDLTQFPTGILATNDGG
Ga0102802_1155955	Ga0102802_11559551	F005911	KLLKSKKGNALLLATAGAIAATFSVYFFVSITTLSADSKQRVAHLYNAYQMGQSLKAKIDGADINESRLGNGTEADVEAPIDEVFHNGKFITLKQMVKKAIIIASKDPTATERSGTDTGYDIVNSGVLIKYADAAGAIIAPTDSPDDATDTLVSDVHLFVNLAGTPDVEFENKPYQTGEPFYYILMDNTSASLAADLLTISTTQYPAGILETKDG
Ga0102802_1164448	Ga0102802_11644481	F005911	AIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQALKAKIDGADINQARLGSGTEDDLEAPIDDVFHNGKFISLKVMVKKAIIIAADDPTATARAGSDMPYDLENSGVLIKYADADGNVIAATDTGSGTDTIVADVQLFVNLAGTPDANSNSPYTDGDPFYYILMETANSGLAADDITVNLVQFPAGILATNDGGPQAEVSVILPQDDEE*
Ga0102802_1173866	Ga0102802_11738661	F009492	MLGLFGIVRAEEAVVTETTQPVVSVTGELSTDITFGDATTFTSPYTGLVFSGDGWVVSTNLSDGMVNIEEAKYSWNVVDGVTLTFGSQAEPYGLAWGLHRPSNNWFVSTPRDHSVTNGVGFGLNKWGVGADLFWGGDSMNEEMEAELYWAGRFSYGLNLLGIDSNVGLSLNSNEAQLVDVSMGNSLFTTSLEYDLSEEADGAYWLRGVVTPPQAQGAFLLIGLNSDEVVTYGVGYKCSDNMKVVSEFNSGLKDAEG
Ga0102802_1176944	Ga0102802_11769441	F009689	RELIKEIMRYIGVLHDVKATAKSIAAGGRDSVKDEESGVSDPYAIKKASASELKAKIQKLQALALKTKVPGATQKLAQIQSLPVYSETEEVAKILKEMLSDLSTRLSVIDEVDAQAKKLVDDAYDKMVHWEKELVKLADAADKAKEQMMKEKLERETLAGDKDVAGKTYDEEKAAYKIIITPYMREIYVITMIKIKINEHCD
Ga0102802_1177580	Ga0102802_11775802	F088935	MSAIGGLDVAFGARMQVVRTNVMCVAIADTGLANSTTVPKYILNTYKEALKGTVIEPDFLYLYEVADLDGSGFTTAAVSNSLFNQDNSGDGTADVTALEVNGVLRMISQCPLAVNSAYADTTAAHGAEGAAHTAHNYYDINGNLALESVLSLSAMAL
Ga0102802_1182733	Ga0102802_11827331	F005911	MLKSKKGNALLIATAGAIAATFSVYFFVTLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARFGSLDEDQIEAPIDDVFHNGKFISLKTMVKKAIIIAADDPTATTRGGVDTPYDLNNSGVLIKYADASGAVIATTATGSADQTKIVADVHLFVNLAGTADADSNSPYADGEPFYYILMDADTA
Ga0102802_1192125	Ga0102802_11921251	F005911	KKQTKKRGEKTMSLKAKILHLLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGSDINQARLGTGTEADLEAPIDDLFHNANFITLKDMVKKAVIIVSDDPTATSRSGSDTGYDLDNSGVLIKFADADGNVIADGAGGDTVITDVHLFVNLAGTADADQNLPYDPGTPFYYILMDHDTASL
Ga0102802_1192643	Ga0102802_11926431	F005911	KKGGLKHIKIIRLKGGKTMNLKAKILNMLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGADINQARLGASTEEQLEAPINDLFHNSNFITLKDMVKKAVIIVSDDPTATARTGSDTGYDEDNSGVLIKFADADGNVIADGTGGDTIITDVHLFVNLAGTADADQNLPYDPGTPFYYILMDHDTASLDATDRTVDMVQFPTGILATNDGGPQAEVSVILPQDGEE*
Ga0102802_1198194	Ga0102802_11981941	F018182	MNPSNNISMKDTRDGVVVKADGRTLLAKLVFAGSARLAECDLGIEELRAAFKKAHGEEASKGTLTYQLNEQDEDHLQLLDDADLALAKKHGSEPLKITSTEVDTRNVFDHASSELAKHGLDAPPTELKNLLDVLQFKPRRLVKCGLAPPKALKNTIKGEEQE
Ga0102802_1201767	Ga0102802_12017671	F041437	MIPFLIATSLTCSEAHELVDKMRAYNVEDETKAEMISIVKEETRNCWDEND*
Ga0102802_1206531	Ga0102802_12065311	F078612	EEVAQLGAGGNYFVHSSCIMQAPGIGSDATMSLVDNDVAKTVLHEFVYHGIKNLGFDESHVHVHVSNGGGHNDIVVIEWEIELNNQYYKALDTKQFFNHLFKNENWHNHVTSWMKGQGKAGVLKAAEAMKNLKEFALILPAHIDTKPQTNFDDATHTEEVKSLIDKWLGSKKPETDTITLYAGCSPTSTLTFTPTDFGAQVGASIITKSLNNDFLFDHAVEMEQTDCGTFKTKVLPKKGEEFGFYLFWKDNLTEWESVSDIGCTGPNTDKCPPGDVLASLASCTNAVQNPGFVSHNRVFDGTTLTYNWGTCENSCGTKPASCAAVTPQLGKSLVAFKKNPHYSHSPLGLAKPKTTTSFASSSVAFIG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007596: Marine microbial communities from the Southern Atlantic ocean - KN S19 DCM_B metaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences