Sample 3300007530

Overview

Basic Information
IMG/M Taxon OID	3300007530 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052691 \| Ga0104842
Sample Name	Human stool microbial communities from NIH, USA - visit 1, subject 809635352 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	88872038
Sequencing Scaffolds	11
Novel Protein Genes	13
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F039198	Metagenome	164	Y
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F076064	Metagenome	118	N
F077319	Metagenome	117	N
F081354	Metagenome	114	Y
F089053	Metagenome	109	Y
F101192	Metagenome	102	N
F101355	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105374	Metagenome	100	N
F105375	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F032312

Metagenome / Metatranscriptome

180

F039198

Metagenome

164

F044555

Metagenome / Metatranscriptome

154

F047125

Metagenome / Metatranscriptome

150

F076064

Metagenome

118

F077319

Metagenome

117

F081354

Metagenome

114

F089053

Metagenome

109

F101192

Metagenome

102

F101355

Metagenome

102

F101357

Metagenome / Metatranscriptome

102

F105374

Metagenome

100

F105375

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0104842_100083	Not Available	42707	Open in IMG/M
Ga0104842_100330	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	16765	Open in IMG/M
Ga0104842_100521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12925	Open in IMG/M
Ga0104842_100685	Not Available	11069	Open in IMG/M
Ga0104842_101280	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	7478	Open in IMG/M
Ga0104842_106170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2582	Open in IMG/M
Ga0104842_106965	All Organisms → cellular organisms → Bacteria	2380	Open in IMG/M
Ga0104842_107805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2203	Open in IMG/M
Ga0104842_113017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1592	Open in IMG/M
Ga0104842_116726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1359	Open in IMG/M
Ga0104842_121535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	684	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0104842_100083

Not Available

42707

Open in IMG/M

Ga0104842_100330

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes

16765

Open in IMG/M

Ga0104842_100521

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

12925

Open in IMG/M

Ga0104842_100685

Not Available

11069

Open in IMG/M

Ga0104842_101280

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis

7478

Open in IMG/M

Ga0104842_106170

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2582

Open in IMG/M

Ga0104842_106965

All Organisms → cellular organisms → Bacteria

2380

Open in IMG/M

Ga0104842_107805

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2203

Open in IMG/M

Ga0104842_113017

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

1592

Open in IMG/M

Ga0104842_116726

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1359

Open in IMG/M

Ga0104842_121535

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

684

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0104842_100083	Ga0104842_10008341	F032312	MPKIKDYDEDLSAPKLLRERARDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIKGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0104842_100330	Ga0104842_10033016	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEETKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAAMKGVMLFTPEAEKLMLAEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY*
Ga0104842_100521	Ga0104842_1005219	F081354	VPFLSAKKALDLVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNPLR*
Ga0104842_100685	Ga0104842_10068519	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSISRISSNIMQITFTV*
Ga0104842_100685	Ga0104842_10068522	F101357	MNLNNITTTLKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0104842_100685	Ga0104842_10068524	F044555	MKTTNPSSRITISQNGNQILTCKVYKELNYILSMSNEEILELISGLDYIGNIPTVPDLKKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0104842_101280	Ga0104842_1012805	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0104842_106170	Ga0104842_1061702	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFSFLKFI*
Ga0104842_106965	Ga0104842_1069652	F089053	LFAFGSRNGCVVDECRTVKGCIRKWLYIFANGQLKLSTAEEVNVKNMEAFL*
Ga0104842_107805	Ga0104842_1078053	F077319	MQENTVCAANCTVQEKRGGQKIMLIRNATLQMSATERACMDVRVMNGCAWEMGAALVKGLYESEIDLRGDVLMPGRMLETPISAADEKALRLLCRRLYREGVRYFVTDCPADALLRTQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD*
Ga0104842_113017	Ga0104842_1130172	F047125	MDVVLLLMVLGVMLSGFWAADAMDHMRKEIIRQEGKRRGWWS*
Ga0104842_116726	Ga0104842_1167262	F039198	MKLTIAEIQGTKYVQIYLTEEERQKEETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNKNVC*
Ga0104842_121535	Ga0104842_1215351	F101192	MTYWGWLLVGIVLLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSFTPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG*

Scaffold ID

Protein ID

Family

Sequence

Ga0104842_100083

Ga0104842_10008341

F032312

MPKIKDYDEDLSAPKLLRERARDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIKGYPFKKYAIPYIFILVAWFIIFLYGLVS*

Ga0104842_100330

Ga0104842_10033016

F076064

LKKTTPGRALENLFYLQYDLPPEASFHATTEETKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAAMKGVMLFTPEAEKLMLAEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY*

Ga0104842_100521

Ga0104842_1005219

F081354

VPFLSAKKALDLVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNPLR*

Ga0104842_100685

Ga0104842_10068519

F105375

MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSISRISSNIMQITFTV*

Ga0104842_100685

Ga0104842_10068522

F101357

MNLNNITTTLKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*

Ga0104842_100685

Ga0104842_10068524

F044555

MKTTNPSSRITISQNGNQILTCKVYKELNYILSMSNEEILELISGLDYIGNIPTVPDLKKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*

Ga0104842_101280

Ga0104842_1012805

F105374

LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*

Ga0104842_106170

Ga0104842_1061702

F101355

MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFSFLKFI*

Ga0104842_106965

Ga0104842_1069652

F089053

LFAFGSRNGCVVDECRTVKGCIRKWLYIFANGQLKLSTAEEVNVKNMEAFL*

Ga0104842_107805

Ga0104842_1078053

F077319

MQENTVCAANCTVQEKRGGQKIMLIRNATLQMSATERACMDVRVMNGCAWEMGAALVKGLYESEIDLRGDVLMPGRMLETPISAADEKALRLLCRRLYREGVRYFVTDCPADALLRTQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD*

Ga0104842_113017

Ga0104842_1130172

F047125

MDVVLLLMVLGVMLSGFWAADAMDHMRKEIIRQEGKRRGWWS*

Ga0104842_116726

Ga0104842_1167262

F039198

MKLTIAEIQGTKYVQIYLTEEERQKEETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNKNVC*

Ga0104842_121535

Ga0104842_1215351

F101192

MTYWGWLLVGIVLLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSFTPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007530: Human stool microbial communities from NIH, USA - visit 1, subject 809635352 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences