NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006746

3300006746: Human stool microbial communities from NIH, USA - visit 1, subject 823052294



Overview

Basic Information
IMG/M Taxon OID3300006746 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052559 | Ga0101796
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 823052294
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size108332215
Sequencing Scaffolds7
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F055715Metagenome138N
F080163Metagenome115N
F088920Metagenome109Y
F090515Metagenome108N
F094005Metagenome / Metatranscriptome106N
F097493Metagenome104Y
F101357Metagenome / Metatranscriptome102N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101796_100047Not Available82103Open in IMG/M
Ga0101796_103331All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae5029Open in IMG/M
Ga0101796_107920All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2328Open in IMG/M
Ga0101796_108904All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii2103Open in IMG/M
Ga0101796_111107All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1718Open in IMG/M
Ga0101796_113512All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1431Open in IMG/M
Ga0101796_129067All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales676Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101796_100047Ga0101796_10004710F094005MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKKGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKHNE*
Ga0101796_100047Ga0101796_1000473F044555MKTTKPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTQQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQNILQNPEDLVSLSQHHRR*
Ga0101796_100047Ga0101796_1000477F080163MKIIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNELKEKKNNFCDAKQFLESINDFDKILFVIITYMKIYFDLCKNYSKISLHVHLVQFDFTTSILIQGFYNYTHRDLSFSTKLESQVLNSEIELLQEKLDLIREEICELIGIDPNLEKQGHEDNYVFNLNIESDNQIGFFLQETEL*
Ga0101796_100047Ga0101796_1000479F032312MPKIKDYDEDLSAPKFLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCFGFTGIKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0101796_103331Ga0101796_1033312F032286MVKWVYQIVTPVRRRALIFDTRLFAGNAADDALVTGNTRSFCRLMCLCVKRRNVKLDSKRRSLPDSALFHADNRTEQKTILPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI*
Ga0101796_107920Ga0101796_1079202F097493MYKFYSKNGTAQFYERGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMSELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE*
Ga0101796_108904Ga0101796_1089041F105375MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEVNIKSINRISSNIMQITFTV*
Ga0101796_108904Ga0101796_1089044F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNLYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0101796_111107Ga0101796_1111074F055715LTKANEFDKINELLIERTAKKFKRASKNKLKKFLTNEKFCDKINELIRVGTAKILDN*
Ga0101796_113512Ga0101796_1135122F090515VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS*
Ga0101796_129067Ga0101796_1290671F088920VSANLHHYPAFGAGVILHLILHFSQKVAIFAPKRAFSLLFVPTLFFAGLSVLSPQTSPKISGQASLYQPWLSPYCLFKDQLEMR*
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