Sample 3300006718

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300006718

3300006718: Marine microbial communities from the Deep Atlantic Ocean - MP0747 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300006718 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0054902 \| Ga0005504
Sample Name	Marine microbial communities from the Deep Atlantic Ocean - MP0747 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	132557595
Sequencing Scaffolds	21
Novel Protein Genes	21
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas cichorii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Atlantic Ocean
Coordinates	Lat. (^o)	-32.4846	Long. (^o)	12.4609	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006551	Metagenome / Metatranscriptome	370	Y
F009426	Metagenome / Metatranscriptome	318	Y
F014836	Metagenome / Metatranscriptome	259	Y
F020371	Metagenome / Metatranscriptome	224	Y
F025846	Metagenome / Metatranscriptome	200	Y
F030135	Metagenome / Metatranscriptome	186	Y
F030551	Metagenome / Metatranscriptome	185	Y
F040684	Metagenome / Metatranscriptome	161	N
F042932	Metagenome / Metatranscriptome	157	N
F052640	Metagenome / Metatranscriptome	142	N
F052865	Metagenome / Metatranscriptome	142	Y
F056191	Metagenome / Metatranscriptome	138	Y
F060053	Metagenome / Metatranscriptome	133	N
F060086	Metagenome / Metatranscriptome	133	Y
F060973	Metagenome / Metatranscriptome	132	Y
F063613	Metatranscriptome	129	N
F065812	Metagenome / Metatranscriptome	127	Y
F066848	Metagenome / Metatranscriptome	126	N
F090440	Metagenome / Metatranscriptome	108	N
F097512	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005504_1003167	Not Available	1154	Open in IMG/M
Ga0005504_1005822	Not Available	1186	Open in IMG/M
Ga0005504_1016353	Not Available	866	Open in IMG/M
Ga0005504_1017422	Not Available	875	Open in IMG/M
Ga0005504_1020943	Not Available	561	Open in IMG/M
Ga0005504_1042409	Not Available	766	Open in IMG/M
Ga0005504_1042471	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	626	Open in IMG/M
Ga0005504_1247341	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	597	Open in IMG/M
Ga0005504_1247345	Not Available	685	Open in IMG/M
Ga0005504_1263420	Not Available	682	Open in IMG/M
Ga0005504_1264165	Not Available	587	Open in IMG/M
Ga0005504_1273425	Not Available	725	Open in IMG/M
Ga0005504_1278358	Not Available	521	Open in IMG/M
Ga0005504_1280968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	544	Open in IMG/M
Ga0005504_1287583	Not Available	1333	Open in IMG/M
Ga0005504_1290752	Not Available	537	Open in IMG/M
Ga0005504_1295101	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila	630	Open in IMG/M
Ga0005504_1296239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas cichorii	521	Open in IMG/M
Ga0005504_1296591	Not Available	772	Open in IMG/M
Ga0005504_1301279	Not Available	617	Open in IMG/M
Ga0005504_1306433	Not Available	770	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005504_1003167	Ga0005504_10031672	F060086	DPFELDSNLLLSSGRHGEDSKRQCIHLYDHETPLLDDLAD*
Ga0005504_1005822	Ga0005504_10058221	F040684	LTLVFSQGKPCCKNKSYKGKVACKFNRANIDLNKIGTVAENGTQIAVAGTQCPLSVQNTSINKKNCTNCAKSAWWKFWGKKKGCCNTNS*
Ga0005504_1016353	Ga0005504_10163531	F009426	AKVNKYLKLPSDMAISETSYTVILFMTTSPRVISAGAVIETLYEGKADYCMIVCE*
Ga0005504_1017422	Ga0005504_10174222	F042932	VDQEVITKSDEEEQISYENTVAKSIDTLADVVQSIAESQQGVEKAITTIVERVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRRSKNPPKKDPAGLKMQEKPVHKAVEDEPEEVVEESRPEMVTKSQHEFSTETPRPGSAIETVDKSFTKDFSPILKDAREQGYEGLNIVAQNILSGKYYKPTPEEIGGF*
Ga0005504_1020943	Ga0005504_10209431	F056191	LCEARVRHALTAEMSETFSSGGSMHASVKLEGIDGRAPQERVEHVA
Ga0005504_1042409	Ga0005504_10424091	F030135	GPKNREELATLSSFTDIGHATFVGCQFPDAILPGGEAIDLVAGPLN*
Ga0005504_1042471	Ga0005504_10424712	F025846	MVNLTVAMDLVSMAHGHVTAMVTVPMAQMKPIVLLHHVKTRVSGIVVMESAYQHPMYVMAQVNFVTQAGLLTVLMAQMKA*
Ga0005504_1247341	Ga0005504_12473411	F063613	AGLLKEGSGECRAGLLVGLALKGSSGLLSLVVGSSTNLSLLLKSLDGILVLPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHA
Ga0005504_1247345	Ga0005504_12473451	F052865	MSLKGYTSFVKKHMDLRNLGIVVLGLVLPSIAGWMTSTGVGSRVMSYVNMVPGMTTNVGKAVGAVALTAGVSYLAATWGIISATEALTANMIALGLVSVGVLQTMSLPVGGNFVSALPSAGISGLGASSYGYIGNYHGEGVGAELLESP
Ga0005504_1263420	Ga0005504_12634201	F014836	MNKLVVVFLLAALSSLALAQCPLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTGQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0005504_1264165	Ga0005504_12641651	F006551	VESASGTIGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDASEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL*
Ga0005504_1273425	Ga0005504_12734251	F060973	MGNDRYLSILDEIKKSGGGSDITKNPNDKVLIIDG
Ga0005504_1278358	Ga0005504_12783582	F090440	LKLATDLRLKRVYHCRITDVGEDDDLRIIIRKSIGG*
Ga0005504_1280968	Ga0005504_12809682	F066848	MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDSVLRTVLAGARQIAADQRLPVDPVAKGAGSEPELDLVA*
Ga0005504_1287583	Ga0005504_12875832	F060053	MAFGLIPAGTITRETIISTRRIPIAGTTTITKGNVCELVGGYLANSPTTATVDVNHFVALETIDNSGGSAGDLSAPVAVSGHYVTVVADGAIRPGARLHISASTAGQVITTGGGGNKQIGWYTGKEGGIIAKAATTPFQETFTDDSDFPPVAAADGDIIEIYLGL*
Ga0005504_1290752	Ga0005504_12907522	F097512	PRPNASPETVEKSYQTDFSPILKDAREAGHEGLSKVAQNILSGKYYKPSDDEVRGF*
Ga0005504_1295101	Ga0005504_12951011	F065812	MGDILLPRLNIDGKPIANKYCEGKMKRTLERGLKDLKPLKRKR*
Ga0005504_1296239	Ga0005504_12962391	F030551	NNGGKRMKNSIRNLIITAALVTGMFGIVNAQTEVSGEFSSDVTVGDATAFSTPYTGLSISGDGWELSTNLSDGDVIVEEAKYNFAISDAITATFGSQAEPYGIAWGSHRPSGNSFVSAPRDHSISTGVGVSTSAYGVGANAFYGDDNYWAARASYDVSAFGINSTIGLSVNSD
Ga0005504_1296591	Ga0005504_12965911	F052640	MVQIRTIDELEALYYGYNRNLLRKADAPATTSTAGVFNAIYGAYAWAQLN
Ga0005504_1301279	Ga0005504_13012791	F006551	ALGASTTGSYDPWAANATIDRDSSSTFDSTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVWLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSDSGDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFKSQ
Ga0005504_1306433	Ga0005504_13064331	F020371	YVSDVKSGGRQRQAALRSSVNSSVDIVNVWETVLGKRDRVYAGKNLAKEVAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAVWDTFVASTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASVGARDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQG

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