Sample 3300006705

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300006705

3300006705: Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP547 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300006705 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053074 \| Gp0092418 \| Ga0031684
Sample Name	Metatranscriptome of deep ocean microbial communities from Atlantic Ocean - MP547 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	75206620
Sequencing Scaffolds	16
Novel Protein Genes	21
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	3
Not Available	8
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Ocean Microbial Communities From The Global Malaspina Expedition
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	South Atlantic Ocean
Coordinates	Lat. (^o)	-26.95	Long. (^o)	-21.4	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000049	Metagenome / Metatranscriptome	3277	Y
F000052	Metagenome / Metatranscriptome	3223	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F001716	Metatranscriptome	647	Y
F006501	Metagenome / Metatranscriptome	371	N
F010461	Metatranscriptome	303	Y
F010686	Metagenome / Metatranscriptome	300	Y
F010768	Metagenome / Metatranscriptome	299	Y
F014836	Metagenome / Metatranscriptome	259	Y
F019484	Metagenome / Metatranscriptome	229	Y
F027881	Metagenome / Metatranscriptome	193	Y
F030135	Metagenome / Metatranscriptome	186	Y
F046996	Metagenome / Metatranscriptome	150	Y
F051870	Metatranscriptome	143	N
F061786	Metagenome / Metatranscriptome	131	Y
F063613	Metatranscriptome	129	N
F070259	Metagenome / Metatranscriptome	123	Y
F090278	Metatranscriptome	108	N
F097173	Metatranscriptome	104	Y
F101008	Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0031684_1000698	All Organisms → cellular organisms → Eukaryota	518	Open in IMG/M
Ga0031684_1013363	Not Available	776	Open in IMG/M
Ga0031684_1016401	All Organisms → cellular organisms → Eukaryota → Sar	602	Open in IMG/M
Ga0031684_1024000	All Organisms → cellular organisms → Bacteria	2068	Open in IMG/M
Ga0031684_1155457	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	642	Open in IMG/M
Ga0031684_1162320	All Organisms → cellular organisms → Eukaryota	572	Open in IMG/M
Ga0031684_1182008	Not Available	653	Open in IMG/M
Ga0031684_1192364	Not Available	516	Open in IMG/M
Ga0031684_1193763	All Organisms → cellular organisms → Eukaryota	600	Open in IMG/M
Ga0031684_1197521	Not Available	541	Open in IMG/M
Ga0031684_1206314	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya	752	Open in IMG/M
Ga0031684_1208891	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Debaryomycetaceae → Meyerozyma → Meyerozyma guilliermondii	625	Open in IMG/M
Ga0031684_1210502	Not Available	1182	Open in IMG/M
Ga0031684_1212634	Not Available	733	Open in IMG/M
Ga0031684_1214563	Not Available	673	Open in IMG/M
Ga0031684_1232933	Not Available	946	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0031684_1000698	Ga0031684_10006982	F070259	MKLESLVIANQHVTVNDLSNFAHTAHHARKVVLAGNYLGLLIFELFIKK*
Ga0031684_1002867	Ga0031684_10028672	F027881	MSLTVARSERVRDVLTHASCTEIFILNFSSARVSNTLICFQ*
Ga0031684_1004153	Ga0031684_10041531	F027881	IMSLTVARSERVRSVLTHASCTEISINFSSVRVSNIQNCC*
Ga0031684_1009265	Ga0031684_10092651	F000049	MRHSKMAEWMENVEKAIARIMADKVYTSAEFKRERDNFQALCKDLERTEVKKWLNQILEILMAERAKSQQETENEKLNVLIKKHEELIPSVQKTSVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLVQLDSKKNIVVDLIAKGKVILEHPD
Ga0031684_1013363	Ga0031684_10133632	F019484	ILGGSLKKIAKKITTSVPISKKVYTNASIIYLSIY*
Ga0031684_1016401	Ga0031684_10164011	F010768	MKEVLNGGYNVHPVPPPNSEIKERIRRKYERKRIKIERLFTLGYTTSGDP*
Ga0031684_1024000	Ga0031684_10240002	F010686	LDLCGQAIKGTWGMSWRQEALKGVEDCEKLGEAVKRALIPRFLN*
Ga0031684_1155457	Ga0031684_11554571	F061786	NNTKGLYLCETIYPPDNGVSCIPPEKLEKAIKKGEIPPQVQADEEDLDGNMDEVIDNCIREVWQYYDPKGVGFLNKKQTQTFFKDALNLVALRKNCKSKDLFQGRKEGAALEEAFRQVNTSGDGRVTFEQFEEFINAYDLDEAVDLLTGGNSEHQINTQGVQMVDNSSLPSGGGPVKGKIEYRDYGALED*
Ga0031684_1162320	Ga0031684_11623201	F090278	SDLQSLWRSKREASEGLVDVDEDDFYEFLQQVNDNRHFRHNAMGNLTCVLHKCGQLTEDMEVNMDFYTTALRAEEPETGFTWDVEGSAAKDPEWREKIATAYEDCHDLAESWPATSLNRRPMTRMFGRQMIFFKCADRTERRVCTEAQLLENLETFYGSESDEETAERIAAIGLPEDKYDAAAISIAVIQ
Ga0031684_1182008	Ga0031684_11820081	F001716	HTDMLSIAAIGALSNTAEISSTNLRAAPAFDNIKASWNQALKLGDFNTNLKCNYDHSANRDFLKEVSLSGDLVEGGADDVSVSYEVSHDFSDKNTNVKLTANTQGTTLSAEYDRNNGIKEVSAERDVSIADQNVNVQPSWLVKAQTARVKLMSKLGDSKDSVSAQIDYDTNGKSSSYEVGYDHNIDAGRDVSATFNPDKKQLDVDYVDNKFESGATW
Ga0031684_1192364	Ga0031684_11923641	F010461	LTVQFFVIYVMIWVAVTVKEFTGWEWHFITNTMENAKGTLAFCPMLCILFVATRMRAMTLTQWKGAPQGWAQDGMYMATWSILLQFLMVLLIPLCTLVMEGKATQPELDEDGNVKWKPSGKIALICVQVVRWLGFVLLYVGANCVMVGAMTLTPETANGRGSVPLVRQTPF
Ga0031684_1193763	Ga0031684_11937631	F101008	KDDRMALEMSVNTMVTPYTFHMNAPYFLPRFFNDINRKTIDATIMHEMGSKLEVKSNCPEFETFIITTTGNKRSVVLNGKELTVVDFQRGARRISQTTELPSGEHLTTTVEWTEDSLKKNQATITVEVTPNRKFEGIFGWDFQTLSTGNFHFDVKGENPWVGNYAIDRHANWEMNKPRYMFNWVGKSEFKTGPFSSFSP
Ga0031684_1197521	Ga0031684_11975211	F046996	DEFSGFVDYFKAVREKIFGGYLDGIDFDWEGYCDAGCLKGTCICAWNDKICGTVTPEELAAGVFWDAPPVPGQKPMKHQCWIMPTTSTFQVMSGITHAMKREGFVVTLVPMSTSMYSGEADTSPKQVMRNEYVKYRMQTSFGQKVDLLDMADGILLQWYSGFDAALCVNTDVSSKACTCD
Ga0031684_1200074	Ga0031684_12000741	F000052	CFIEYEQIAFNETAEICRTPLVKDCDVQGPEICRTEYESECWTKQEVHDVEDDVVECTTEVEEKCEDETSGYTTNTKCSKWPREVCSVSKKPVKKYTPITGCTKEPRELCAPAGCGFKEGREECYEKTQTVVQDAPKEQCTLEPQRTCKHVTKLVPKLEPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPTEESGLA*
Ga0031684_1206314	Ga0031684_12063141	F097173	SMQCVISLTIQYFLVYTALALVRTAADTFNVKYDNLPIQDILKTATYTVAYAPMLAVLFLGCRMRVTWLTQGKGNPPEYVQAAMYCSTYAVLAMTLCVCVIPVFTGKVFAVDPKTGDIPMDAKPFSNAALGVGFTVLKYLIMLGLYAGALVVVYGIINFEPPKGTWPGDKIPPVSPAVQCVMILSCQYFLVYGGIQVCKSVIEFAGDLFGYTHTLQEALNTATLSINFCPMLAVLFIGARMRALQMDPVN
Ga0031684_1208891	Ga0031684_12088911	F063613	FILLTMNLITSLLKKRGGERGSGLLVGLALKGSGGLLALVVGGSTNLSLLLQSLDGILILPSDLVGQTTEASEVAARSESQHTEGLRANHTVDLVVRRGDTLEDLEVSQSGGTTGGLVGDHSTDGSPENLRGSTEVERTTSGVDVASLSKEVLVLELVSEVRTRDVDVLATNNNDLLSGQELLGNSGGKTAQKVTLSVNHDSLLKHA
Ga0031684_1210502	Ga0031684_12105021	F051870	MNTMLSLSFLVVLLGQLTETMATTEVNASYNFLGYGSCRSADVSRYPNHYLKIGNVNREECVAQCTADQGCTHMEWGLNGHGQNQCVIFSPQQQQGIAPRGWIFVHGNGGQSITQANGWSSVSTCSAKVHPDPANYRFLGTGSCRSDNIFTYPNHYLKTDPTNALTRFACVNQCNSEVGCTHMEWGLNGNGEKQCVIFCPQCDPSMVPNGWAFVAGNGGTAITQGNSWSDVSKCFAKSMSCQDAQDGYLYTKKTNPKICYKDHTWRDYLTGYWGYEAVCGGAICEMEPGLALALTPQPYRSWWTPHCKVVQCKFGPRRLQEAKSGQLRGTFV*
Ga0031684_1212634	Ga0031684_12126342	F030135	ELATLSSFTDIGHSTFVGCQFPDAILPGEEAIDLVAGPLN*
Ga0031684_1214563	Ga0031684_12145631	F014836	KLVVVFLLAALSSLALAQCLLERNTCYEEEIYNGCFCFAEWNDANDVGNWTVNENWLQLMEPSWVHFVSISGDNTVTVDEERRINELYVGPNRWDTTRLVIDEDLTIVYDDVPVISRIQAYRLPTCQVRLIIQGKGFGFVSEDIAVVAEDFYEVDNDSNIDDMEPFTYVCNNPTLTYRDAKIECNLTAANIMPSALKVQVRANGYTTDFVLLSEYVQ*
Ga0031684_1229161	Ga0031684_12291611	F000075	FFALVAAVSATQYDSMTEDELLVNLESTLNSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0031684_1232933	Ga0031684_12329331	F006501	LMESHKIASDDIKARLDAIAKCEQQSREQDKGIQNHTATVVNNARVIHRDCRDKELRMTKDANEKCQFLDFLTVPAALPSESADRKAKLAYGNTMMGYWCNKDDQMKACAAATDALAPVVKECNKKQTQFESEFCAMAIVYHAQCQDLNDVCYTATRAAYDTSVASTTKLVAKWKVEYSALKKINCFLDVWLSDGDANTVSSEKLAACKATDADASVMNIDFGTPVKEFVCADAGFGTLPDYPGTPDFVTKEYGAWPELVQDVIHCHIEDPVAVSTTAGANTPAYR*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.