| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006611 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111355 | Gp0107627 | Ga0101553 |
| Sample Name | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS903_Marker113_DNA |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 193269043 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Axial seamount, northeast pacific ocean | |||||||
| Coordinates | Lat. (o) | 45.92274 | Long. (o) | -129.988104 | Alt. (m) | N/A | Depth (m) | 1522 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005684 | Metagenome / Metatranscriptome | 393 | Y |
| F018078 | Metagenome / Metatranscriptome | 237 | Y |
| F033215 | Metagenome / Metatranscriptome | 178 | Y |
| F062154 | Metagenome / Metatranscriptome | 131 | N |
| F072444 | Metagenome | 121 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0101553_1096766 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium | 555 | Open in IMG/M |
| Ga0101553_1122450 | Not Available | 864 | Open in IMG/M |
| Ga0101553_1163001 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 1152 | Open in IMG/M |
| Ga0101553_1173004 | Not Available | 500 | Open in IMG/M |
| Ga0101553_1293231 | Not Available | 587 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0101553_1096766 | Ga0101553_10967661 | F062154 | VGANGVKVLSVVNARPEQPVNSVANGVKVLSVVNARPEQPVNSVVNARPERLVNRVVNGVRAPSVVNVRPEQAVSVDRSPGAVVVGEDQVVLCGCSL* |
| Ga0101553_1122450 | Ga0101553_11224503 | F018078 | QSILKFEKFLVWQLHNRTEIVIAIVAFVIGAILF* |
| Ga0101553_1163001 | Ga0101553_11630013 | F005684 | VYDTEESPLSLMQVVRRKSEVREGRLCNRNEPRQAHCEPERGRFPDRGWNEHPHRSKSKQVRM |
| Ga0101553_1173004 | Ga0101553_11730041 | F033215 | PPVEERVPAVALIPPLRDKSASPVSIFSPAASRVTGCAMLSLDILSSSVKAKLANSSVPTDREALSSIVEFAAKRRVVELSGSTPLKSTPSTSRILLLLSDRAFAFVVNVVPFVFRVAPVSDKAFSSTNVVPGIEILVPDGALAPETRVIVPPEEFSDALSVNANA |
| Ga0101553_1293231 | Ga0101553_12932313 | F072444 | MPERENNAFWEIAELIEREMSILRKMRPVGPKEKALLKKMMDDKKKEYEKRTNSPKITRFGSSLT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |