NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006525

3300006525: Human stool microbial communities from NIH, USA - visit 2, subject 764062976



Overview

Basic Information
IMG/M Taxon OID3300006525 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052543 | Ga0101027
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 764062976
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size175242551
Sequencing Scaffolds17
Novel Protein Genes19
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria1
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → Pedobacter nutrimenti1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D51
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. AR201
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051936Metagenome143N
F055775Metagenome138N
F056682Metagenome137Y
F067844Metagenome125N
F068941Metagenome124N
F073656Metagenome120N
F074964Metagenome119N
F076064Metagenome118N
F081354Metagenome114Y
F081453Metagenome114N
F090484Metagenome108N
F098313Metagenome104N
F099269Metagenome103N
F099406Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0101027_100038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes152421Open in IMG/M
Ga0101027_100040All Organisms → cellular organisms → Bacteria149742Open in IMG/M
Ga0101027_100043Not Available145260Open in IMG/M
Ga0101027_100291All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes56756Open in IMG/M
Ga0101027_100306All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales54882Open in IMG/M
Ga0101027_100372All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae48631Open in IMG/M
Ga0101027_100467Not Available42789Open in IMG/M
Ga0101027_101805All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae14988Open in IMG/M
Ga0101027_104343All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pedobacter → Pedobacter nutrimenti6646Open in IMG/M
Ga0101027_106535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae4440Open in IMG/M
Ga0101027_110990All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus2659Open in IMG/M
Ga0101027_111963All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D52439Open in IMG/M
Ga0101027_114142All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. AR202063Open in IMG/M
Ga0101027_117146All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1679Open in IMG/M
Ga0101027_124092All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1157Open in IMG/M
Ga0101027_124178All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1153Open in IMG/M
Ga0101027_145574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0101027_100038Ga0101027_100038137F068941MNNKKFIIGVVLLLLLMLGGTYAYYKWSSSDNMNVNVKIDGGTVNFNGGTNITSTIIPTASKEEGIKKDITVKASRAGATMNLYMDLTTMPEELKEKSFIYELYYNDNSLVTKGNFKDINYSSNGTTTLTLFTGRDISTNTTDKYTLYLWFDGKDYDNPETMQNKTLSFDLYATGENAVLAGN*
Ga0101027_100040Ga0101027_100040156F068941MIGGTYAYYRWNSTSNINVSVKISGNTVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG*
Ga0101027_100043Ga0101027_10004327F090484MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVGKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDSKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPISQYSSL*
Ga0101027_100043Ga0101027_10004346F099406MAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYHLNYFLEGNDFENNFKLKIVFASFANADSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEHVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*
Ga0101027_100043Ga0101027_10004382F098313MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEE*
Ga0101027_100291Ga0101027_1002919F068941MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG*
Ga0101027_100306Ga0101027_10030624F081453MSPFFLLAGDNIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ*
Ga0101027_100372Ga0101027_1003721F067844MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVITPQHRSY
Ga0101027_100467Ga0101027_10046741F055775MAQIAQQDNLVIEVATTATALDDDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGESPKYTIDIIKADSGAVEAIELN*
Ga0101027_101805Ga0101027_10180512F056682MKMQSRVGKVVNQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNREDQEVL*
Ga0101027_104343Ga0101027_1043431F051936LLFAPLALRGKAFGFSVLQEHTVMTPVISVFFAMLIIRYLSIHISIKK*
Ga0101027_106535Ga0101027_1065358F067844MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQHRS
Ga0101027_110990Ga0101027_1109902F074964MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKVVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYGEEYKPFGFATAETLETKKSAKWLVKETDEYKATYVAVKIKSYSIRTIAKCVNEYLTHESNQQ*
Ga0101027_111963Ga0101027_1119634F056682MKMQSRAGKVANQPIGQDKMYSASFREFPSKNHGPFSFQELGKIHENQEVL*
Ga0101027_114142Ga0101027_1141421F051936VLFFPLALRGKAFGFSVLQEHAVMTPIINILFAMLIIRYLSIHISTKK*
Ga0101027_117146Ga0101027_1171462F073656MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRSDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0101027_124092Ga0101027_1240922F081354LSAKKALDLVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNPLR*
Ga0101027_124178Ga0101027_1241784F076064RFAVGTNGEEGFRHHISEELKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*
Ga0101027_145574Ga0101027_1455741F099269RGDAEASFFVHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*
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