NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006473

3300006473: Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C1



Overview

Basic Information
IMG/M Taxon OID3300006473 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117456 | Gp0124029 | Ga0100239
Sample NameMicrobial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C1
Sequencing StatusPermanent Draft
Sequencing CenterAgriculture and Agri-Food Canada
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size45492876
Sequencing Scaffolds6
Novel Protein Genes8
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales2
Not Available3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada
TypeEngineered
TaxonomyEngineered → Solid Waste → Animal Waste → Unclassified → Unclassified → Manure → Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationSherbrooke, QC, Canada
CoordinatesLat. (o)45.4Long. (o)-71.9Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005744Metagenome / Metatranscriptome391Y
F015738Metagenome / Metatranscriptome252Y
F017851Metagenome / Metatranscriptome238Y
F034940Metagenome / Metatranscriptome173Y
F072355Metagenome / Metatranscriptome121Y
F088943Metagenome / Metatranscriptome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0100239_109838All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales872Open in IMG/M
Ga0100239_115944Not Available5918Open in IMG/M
Ga0100239_118399Not Available1419Open in IMG/M
Ga0100239_120400Not Available2332Open in IMG/M
Ga0100239_120402All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales5135Open in IMG/M
Ga0100239_148516All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon520Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0100239_109838Ga0100239_1098381F017851MTSALSQRFFETFPPEVARGILEGDRLRIHAVKVSVVCEGDEVGFAIDTLPRDGRPKAWEKTTWKICRILKREVDRLSPETKNLLAALAHITPDEPLLLFQIETWLSMQDDGGSWWEAPAYLSLIATSLPD
Ga0100239_115944Ga0100239_1159442F072355MSIINTTAITAAWHNLMFQLDMAKYHIDENGVADLQSIIFGVAGAVVALIVAVIVLGNLDTATQGTVCDTSTYYSLLTTVNQYGSTSITLLAIGVIVAGAAAILYIIRGSF*
Ga0100239_118399Ga0100239_1183991F088943MRGLSRSVWAHEDHLVAIYRRTGDTSFTYGDIADLIPCGTMLRYTVPGIFVPARDANGNPLKAGSRSRATVWCWHPRAAELCRQAIERDHRWENLANGLTGGSECA*
Ga0100239_120400Ga0100239_1204002F034940MGNNCWYYRAQYAGMTKVCMRQSIVERGRIRRFGLCPIPPDSEAWRRCGFAIGQHEIPMSVLQEMQAEWGRR*
Ga0100239_120400Ga0100239_1204004F005744MDEMFEIIKAGPADAPPEQALYRIQQTYPDGSGGRLNVDWTGLHRLHDLIHDRIALEGYVCETCSTRGCHRPATWEIECRGAGLRSRLIYTCDKHVPDEAILSPQDEMRRLVEKREE*
Ga0100239_120402Ga0100239_12040210F005744MDEMFEIIKAGPADAPPEQALYRIQQTYPDGSGGRLNVDWTGLHRLHDLIHDRIAMEGCVCETCSTRGCHRPATWEIECRGAGLRSRLIYTCDKHVPDEAILSPQDEMRRLVEKREE*
Ga0100239_120402Ga0100239_1204028F034940MGNNCWYYRAQYAGMTKVCMRQSIVERGRIRRFGLCPIPPDSEAWRRCGFAIGQHEIPLMVEDRKIKED*
Ga0100239_148516Ga0100239_1485161F015738MPEIERPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPPSGLEGMSWCRHFDRPIDHRLVKEDRPACIEERHGCAGCPESTYRVHRVTDR*
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