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Sample 3300006447
3300006447: Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture A4
Overview
| Basic Information |
| IMG/M Taxon OID | 3300006447 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0117456 | Gp0123998 | Ga0100194 |
| Sample Name | Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture A4 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Agriculture and Agri-Food Canada |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 47352842 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 3 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada |
| Type | Engineered |
| Taxonomy | Engineered → Solid Waste → Animal Waste → Unclassified → Unclassified → Manure → Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information |
| Location | Sherbrooke, QC, Canada |
| Coordinates | Lat. (o) | 45.4 | Long. (o) | -71.9 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F004383 | Metagenome / Metatranscriptome | 440 | Y |
| F037272 | Metagenome / Metatranscriptome | 168 | Y |
| F043951 | Metagenome / Metatranscriptome | 155 | N |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0100194_101728 | Ga0100194_1017283 | F043951 | MEHLSLGRPIEASLGPRYQCPVCGQKLWTIQAPWTGWQEWYKTEDGRRHYKHSCNIMRDAHIAFRRMFGQDW* |
| Ga0100194_104678 | Ga0100194_1046782 | F037272 | MTRKQIMRVHTAAGVEEIDADRLLVQEDEYVLFQGEEEVRRVPIADVLSETDPETGEETGGIETIYSRS* |
| Ga0100194_148550 | Ga0100194_1485501 | F004383 | MSGDNLLERAFMARIRADELRAELKALQKEFDEREDVIALKRQIDRCDHERQTCIEQAQTTGVTKQGSFLLRERTRTVRTVIPWKFAEKFGLERFCRVANIPVGAAEKEVGKKDLEDVVEKSVTITGVSVEYERPEAEA* |
