NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300006217

3300006217: Combined Assembly of all intestinal viral_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA



Overview

Basic Information
IMG/M Taxon OID3300006217 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114764 | Gp0121194 | Ga0081461
Sample NameCombined Assembly of all intestinal viral_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Texas Southwestern Medical Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size791632371
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIntestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUT Southwestern Medical Center, Dallas, Texas, USA
CoordinatesLat. (o)32.815891Long. (o)-96.846336Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F039198Metagenome164Y
F047755Metagenome149Y
F066905Metagenome126Y
F082887Metagenome / Metatranscriptome113Y
F082888Metagenome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0081461_1019108All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6427Open in IMG/M
Ga0081461_1025145All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4857Open in IMG/M
Ga0081461_1028170All Organisms → cellular organisms → Bacteria4338Open in IMG/M
Ga0081461_1030709All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3989Open in IMG/M
Ga0081461_1067825All Organisms → cellular organisms → Bacteria1875Open in IMG/M
Ga0081461_1109332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1217Open in IMG/M
Ga0081461_1133258All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1019Open in IMG/M
Ga0081461_1189163All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium739Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0081461_1019108Ga0081461_10191085F013656MKKEETKKLYKEPNKSETETTINVLYNEKILSIYTNKVDLQRSLNKAIGKATKEYIKGKSIIGSVWEIPLSEKSKITKIILKANIFEM*
Ga0081461_1025145Ga0081461_10251456F013656MGDIMGDKIYKRINKDEIETTINVLYLEEIISIYTNKPDLQRKLNKLLGEPVKEYKIKRSIAGSVWEMPFKDKTRISKMILKANIFEL*
Ga0081461_1028170Ga0081461_10281704F082888MSQIIEVIVENKNYQIEWALSEHFEELEGKKFMLNKMAAEQIEMINNLSNTAKILLSAVAGAVIQHLIDNNCQIDNIFENGYFIVKN*
Ga0081461_1030709Ga0081461_10307096F082887MKKVKKVAKYATNILAIVSALVAGINAVDGITIPYAIQIVKVIAVVNGVIGTFLLGQKAINKEDK*
Ga0081461_1067825Ga0081461_10678254F047755MENEKVKYLIDMINDMDIKDKLRLAICMSQSEWSGLIYNTKENFEKSDYMLKSIDEEYRTTLINFGKYKIVMLAMAKLMEMETTEQNKVALYLFNNIKIL*
Ga0081461_1109332Ga0081461_11093322F047755MDNDKVKYLIDMINDMDIKDKLKLAICMSQSKWSGLIYNTKENFEKFDNMLKSIDEEYRTTLINFGKYKLVMFAMAKLMEMTKEQQNQVALYLFNNVKIEVIV*
Ga0081461_1133258Ga0081461_11332581F039198MQITSNEISNIKYVQIYLTNEELEKQETKEVIEKYKKDKYSVAIFVTGKENYPEILKKIITKQVELNRNVC*
Ga0081461_1189163Ga0081461_11891631F066905MDETRNCGCGCGCGNNNGCLSGLFGGCGDSEILFFIIIFLLLFTNCGC
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