NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005922

3300005922: Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14



Overview

Basic Information
IMG/M Taxon OID3300005922 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114820 | Gp0116313 | Ga0075128
Sample NameSaline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRHL14
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size7051863
Sequencing Scaffolds11
Novel Protein Genes21
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli1
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationDeep Lake, Antarctica
CoordinatesLat. (o)-68.5563Long. (o)78.1877Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006455Metagenome373Y
F007732Metagenome346Y
F020827Metagenome222Y
F027372Metagenome195Y
F030941Metagenome184Y
F032101Metagenome181Y
F046097Metagenome152Y
F051583Metagenome144N
F052986Metagenome141Y
F057005Metagenome137Y
F058558Metagenome135Y
F066289Metagenome127Y
F084902Metagenome112Y
F104109Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0075128_100082Not Available2814Open in IMG/M
Ga0075128_100095Not Available2174Open in IMG/M
Ga0075128_100097All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli2104Open in IMG/M
Ga0075128_100101All Organisms → Viruses → Predicted Viral1976Open in IMG/M
Ga0075128_100125All Organisms → Viruses → Predicted Viral1518Open in IMG/M
Ga0075128_100132All Organisms → Viruses → Predicted Viral1373Open in IMG/M
Ga0075128_100134Not Available1358Open in IMG/M
Ga0075128_100149All Organisms → Viruses → Predicted Viral1235Open in IMG/M
Ga0075128_100307All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria748Open in IMG/M
Ga0075128_100470Not Available590Open in IMG/M
Ga0075128_100545Not Available547Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0075128_100082Ga0075128_1000822F032101MSNQIEDDVIEQLVNEGANFEAALCVNSAIVGDLLIGELDSWNVGICEVKKDDEDLLVYGENGHLVKRVNTDVWTTSTLFEDTEVKDLAKIADKINSAIASECGEL*
Ga0075128_100082Ga0075128_1000824F046097MSNQIEAVEIEAQNVLVDREGDMYSLRVIDTNSKVHRLESAALTLNDYAFATSGCEISEHGKVVTVKRLETGSRYIHLSTE*
Ga0075128_100095Ga0075128_1000952F006455MYQQVKPPAGWTEIEPEFEFQHQTFQRRRDGLVVAIELERMSFYNVVTLPENYYQEDQVIDCIEIGVEPEDAAETAREWMEQNNRQ*
Ga0075128_100095Ga0075128_1000953F027372MSDEIIVSSTEALYDDYANLKSQTPSGYAPYGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVHKSYDPELRFRLRMTEELGGFADTDCLTIEKIGEKAAERAAEIGRDYAPTDMFAPDEHFEIPTDSAQYVNIIAPQLQQLAGYAPYDSTPTDIGYYIHKEDVLPAFREAYYSEAINRQ*
Ga0075128_100095Ga0075128_1000954F006455MNQQVKPPAGWAEIEPEFDHQRQTFQRRRDGLVLAIEREGRSSHNIVTLPENYYQDNQVIDYVEVGLKPENAAETAHEWMEQNNRQ*
Ga0075128_100095Ga0075128_1000955F057005TDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVYKLYDPELRFRLRMTEELGGFADTDCFTVEEIGEKAAERAAKIGREYAPTDMFAPDEHYEIPTDSAQYSNNIAPQLRQLAGYEDGTGKGTYNTLSTDIGYYIHKEDVLPAFREAYHSEAINRQ*
Ga0075128_100097Ga0075128_1000972F052986MIEHALVRHGYGTLDEIRQMDTRDFLDAIEYQEIASAIEQYHTDEAQRAR*
Ga0075128_100101Ga0075128_1001014F104109MQELLNYVPEVIVVGNIEFAVAGAALALGFPKAARWVVERRTSTDLNSDGHVGKPPGDTSESQVEDAADRTGDK*
Ga0075128_100125Ga0075128_1001252F020827MDGAKQPTVKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLPDGTMITKLTVTAFDVLPVVKNIEPVEKPDHL*
Ga0075128_100125Ga0075128_1001253F006455MNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIERDGRRSHNIVTLPENYYQDNKIIDCIRAGVEPEDAAETAHEWMEQNNRQ*
Ga0075128_100125Ga0075128_1001254F057005TDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVYESYDPELRFRLRMTEELGGFADTNCLTIEEIGAKAAERAAEIGRDYAPTDMFAPDEHYEIPTDSAQYVNDIAPQLQQLAGYAPYDTTPTDIGYHIHKEDVLPAFREAYHSEAINREI*
Ga0075128_100132Ga0075128_1001322F006455MNQQVNPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVTLPENYYQDNRVFDFIEVGVEPEDAAETAREWMEQNNRR*
Ga0075128_100134Ga0075128_1001342F006455MNQQVKPPAGWTEIEPEFDHQRQTFQRRRDGLVVAIEREGMSSYNVVTLPENYYQDNQVIDYVEVGVEPEDAAETAHEWMEQNNRQ*
Ga0075128_100134Ga0075128_1001343F020827VKHDIAGWYEIGQRWKLWKDGQLRDFYIDHIHVLESDDPDRIEVEHYLSDGTMITKLTVTALDVLPVVKNIEPVEKPDHL*
Ga0075128_100134Ga0075128_1001344F007732MSDEIIVSSTEALYDDYDNLKSQTPLGYAPFGLAGIVVNDCDIICGNCATDEELSDNDNGAIFGNSEWDYPAPVCDDCQKPLNVDLLVYKSYDPELHFRLRMTEVLGGFADTNCLTIEEIGEKAAERAAEIGRDYAPTD
Ga0075128_100149Ga0075128_1001492F058558MNINDKFQHRAFKAVVKTDDHDVAENEIMAGLSSVGVNDDEYRMLWTRDNFNTSSHNHVAAIFIVPTEYMADLPTLVERGNAISINEVELQSVDA*
Ga0075128_100149Ga0075128_1001493F020827MKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLSDGTMITKLTVTVFDVLPVVKNIEPVEKPDHL*
Ga0075128_100149Ga0075128_1001494F066289MSDEIIVSSTEALYDDYANLKSQTPLGYAPFGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDHPAPVCEDCQKPLNVNLLVY
Ga0075128_100307Ga0075128_1003072F030941VIALAVLCAFMALPSVLGLLVIFHVFVRRKSAPVDASNRINHLRLVWFAMTREGLFVDLFPWLKNDEYDNVREHNA*
Ga0075128_100470Ga0075128_1004702F084902NNIAPQLRQLAGYEDGAGKGTYNTVSTDIRYETNKEDLLHEIHKEDVLPAFREAYHSEAVNREI*
Ga0075128_100545Ga0075128_1005451F051583MTPHVPLTVGRSAPEGTKPNMDYTNPEDVANIDEPTRQQEIGLLSGLVDGTFVCVNHRGFLVNRTDKGSIELSRDGEVLGGRYYVTENNFAGLVEWLNAKVALYGETA*
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