NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005853

3300005853: Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPADES assembly)



Overview

Basic Information
IMG/M Taxon OID3300005853 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067861 | Gp0093347 | Ga0079997
Sample NameArchaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPADES assembly)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size98624073
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013155Metagenome / Metatranscriptome274Y
F014385Metagenome / Metatranscriptome263Y
F021443Metagenome / Metatranscriptome219Y
F023604Metagenome / Metatranscriptome209Y
F043237Metagenome / Metatranscriptome156Y
F051572Metagenome / Metatranscriptome144N
F068875Metagenome / Metatranscriptome124N
F073601Metagenome / Metatranscriptome120Y
F075398Metagenome / Metatranscriptome119N
F081384Metagenome / Metatranscriptome114N
F088087Metagenome109N
F096328Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0079997_104853Not Available663Open in IMG/M
Ga0079997_107431All Organisms → cellular organisms → Bacteria866Open in IMG/M
Ga0079997_112814All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.821Open in IMG/M
Ga0079997_114834All Organisms → cellular organisms → Bacteria7369Open in IMG/M
Ga0079997_115348All Organisms → cellular organisms → Bacteria4067Open in IMG/M
Ga0079997_116028All Organisms → cellular organisms → Bacteria4701Open in IMG/M
Ga0079997_116987All Organisms → cellular organisms → Bacteria133099Open in IMG/M
Ga0079997_118483All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus3766Open in IMG/M
Ga0079997_118698All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium32260Open in IMG/M
Ga0079997_119642Not Available1112Open in IMG/M
Ga0079997_121850All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.2211Open in IMG/M
Ga0079997_127655Not Available554Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0079997_104853Ga0079997_1048532F043237LEYDGFVFYLCRLPSKKEVVSYCLPRTEGAFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFINNCLNAIEKASSLTYPSPKLYTGHVNKLLRQLYGILAYTYNDRERLSAIKRKVKHWVVEALKSQYGLKPKDAMLDYSRYVLKFSDVLRKKKSVFRNL*
Ga0079997_107431Ga0079997_1074311F014385MRRQNWMVECDWYELMQIIFVRSAMEQLAPEEERALWLYAEGARLPKRERQLAETAIAKVRRMLNLE*
Ga0079997_112814Ga0079997_1128141F013155LAVTVWLLRLLIPVWQTLRKVVFALENYDFDKLAKEFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQEGFVRQMAERLQ*
Ga0079997_114834Ga0079997_1148346F075398MLRRLKSGRLTFGVSVGLLGMALMSTGYARVDKAPTFKTDPYPFVENLGQLADPEGRPLRDAYFTFEAPGMRGYVTRWG*
Ga0079997_115348Ga0079997_1153481F023604MRLHFLAPYLLSLTMAMDIPVPKAAVKSRALEKAALKGMRPLAGVREEKPRQAYANETNFCKVKIDYISN*
Ga0079997_116028Ga0079997_1160283F073601VSLALGRAMLQAKATCLVMVLPAKRREGQRMFGLLHIAWRCAVKIMECGRIIRTLPVEKKALAGMGVLLQQG*
Ga0079997_116987Ga0079997_11698772F088087LKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAERAIERFIAGGDE*
Ga0079997_118483Ga0079997_1184834F096328MTEAAYFWSKEAEKILAPYVQHLVGAEEPPEISSPLFAMPWDYSFNGLRVDLKLACKARSYRRISHRTLTDIRKSLESGVMVALFIPPHLYLLYPWGAIWDGSLEFLYTCPSILIPESVVQKVCEIYNRMVL*
Ga0079997_118698Ga0079997_11869814F068875VVSLSDMAIQCRCGQPIEAFGVPSCYTKMAPIVRLIFTTKANQLITDPATQLELSPANSTFPDIYRLITPRLDEVTSERPEAITEEIGATTYYVRDAARTITATVGQIPTEWAQRVAELRCQAEVGVFLIDANGTIWGRKVDTQTGVAGAPLPVVPSSVDVRFAFPSYTSVQKHIISFQLPFVLADYEIIPLWNNREVLNYLAPQPVGFRVFEDGGTWVVFLFSKYHSPEGTIVVPIANVVVPSEIEIYDSTGTTLVATGASNLGGGKYSLTSSLTSGTQYILDCTAVSSPPRSQFDWPAIRVPFRA*
Ga0079997_118698Ga0079997_11869818F081384MLITPSDFGGDYRLFNANNLDPDTIQAIDQAQAELARDLFPVGHSFITGNLPSAPPNLGLRALGLHNLFVPWVFLRLELGILGAGVKRASDVPGRSRFASGAFFAIARQYRYFLDDWLPYEGYIEGIASSPTVLNIPIIASQILAPGMEIEINSERYSVVASSTGLLTIDPPLPLGTGNVRFRQLSLRVNRKWNYL*
Ga0079997_119642Ga0079997_1196421F021443MKCLFNSGKLTFMFRSSYVTFYNYVYSYYQTNEILSFAIMDLVFKIINQQERKSIILKKRKPIIHLLNYIDILNFNSNSNKFEITFSLKNKYKTPLIYNLYLYRSLYRRRYYKDFYKDSLEVIERENLCIIRADDDYASRIQPKNLNLATMLMYILERKEIDMIDVNGIIFYCVFLM*
Ga0079997_121850Ga0079997_1218502F013155MELYQVVVIAIALNLAVTVWLLKLLLPLWQYLKKVVFVVDEYDFNRLINQFLNGEKPISETIHIKTTENKDEGYKEIIITRAYKKPLDPREIQEGFVRQMAEKLQ*
Ga0079997_127655Ga0079997_1276552F051572MTSRTHSGPFAEVRTFADVVLEGGCKKSLQFLNAYFDLCVLAVLIKATPASPMVKLRPEIVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFL
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