NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005800

3300005800: Sediment microbial communities of hot springs in Rotorua, New Zealand ? Tikitere hot spring, NZ13



Overview

Basic Information
IMG/M Taxon OID3300005800 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116259 | Gp0119890 | Ga0079639
Sample NameSediment microbial communities of hot springs in Rotorua, New Zealand ? Tikitere hot spring, NZ13
Sequencing StatusPermanent Draft
Sequencing CenterOak Ridge National Laboratory
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size195583763
Sequencing Scaffolds22
Novel Protein Genes24
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon11
All Organisms → cellular organisms → Archaea → Euryarchaeota1
Not Available2
All Organisms → cellular organisms → Archaea3
All Organisms → cellular organisms → Archaea → TACK group2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSediment Microbial Communities Of Hot Springs In Rotorua, New Zealand
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Thermal Hot Spring → Sediment Microbial Communities Of Hot Springs In Rotorua, New Zealand

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationRotorua, NZ
CoordinatesLat. (o)-38.0631325Long. (o)176.360798Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004454Metagenome / Metatranscriptome437Y
F013170Metagenome273Y
F020112Metagenome226Y
F025877Metagenome200Y
F038537Metagenome165Y
F051554Metagenome144Y
F062402Metagenome130Y
F064214Metagenome129Y
F076768Metagenome117Y
F078228Metagenome116Y
F079345Metagenome / Metatranscriptome116Y
F102093Metagenome102Y
F103293Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0079639_1000240All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon20752Open in IMG/M
Ga0079639_1000344All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon17385Open in IMG/M
Ga0079639_1001000All Organisms → cellular organisms → Archaea → Euryarchaeota10150Open in IMG/M
Ga0079639_1001466Not Available8207Open in IMG/M
Ga0079639_1001807All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon7324Open in IMG/M
Ga0079639_1002071All Organisms → cellular organisms → Archaea6763Open in IMG/M
Ga0079639_1002579All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon5940Open in IMG/M
Ga0079639_1004600All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon4224Open in IMG/M
Ga0079639_1006524All Organisms → cellular organisms → Archaea3413Open in IMG/M
Ga0079639_1008930All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2813Open in IMG/M
Ga0079639_1014399All Organisms → cellular organisms → Archaea2097Open in IMG/M
Ga0079639_1015742All Organisms → cellular organisms → Archaea → TACK group1989Open in IMG/M
Ga0079639_1016328All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1944Open in IMG/M
Ga0079639_1016965All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1893Open in IMG/M
Ga0079639_1017000Not Available1891Open in IMG/M
Ga0079639_1020992All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1652Open in IMG/M
Ga0079639_1023462All Organisms → cellular organisms → Archaea → TACK group1539Open in IMG/M
Ga0079639_1039861All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1090Open in IMG/M
Ga0079639_1065051All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon789Open in IMG/M
Ga0079639_1075693All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon714Open in IMG/M
Ga0079639_1083505All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon669Open in IMG/M
Ga0079639_1099693All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon594Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0079639_1000240Ga0079639_100024015F102093MMCTYIRLSINMPAKSEHKIMKHGTSSVVVIPKPYRDYHGLKPGTPVTVLYDTLLLIVPKNLEPLLREKQHLIDMLLGQKVEGEK*
Ga0079639_1000344Ga0079639_10003445F038537MHRAVYFWRGLYPLLCRFCREYGVPFNRVVNLAVQRFLGGCDVGELRLRARLALLLREEVELRRVCNAMLRSGSYLPGYVQRVLREPGRPLTHIPDAQRPLKALNPREERVFRKIAARREQIAREIAEIEEQLLRDVKPFRLKPDLRGSRSRRRLCGKTNLKEVKKSNGETA*
Ga0079639_1001000Ga0079639_10010003F013170MSVHLHTTITKKANDILEELAKTYGTKSRVLEKALETLLRVDKVGSCNDCAIKAKVSEQTKLREALDLTSISRRNLDSLLEIAIGNKTIEDFIKEQKAEAKNTIEILRSSISWKPPSNFKEFLIVLEEIRNLTNMYEIPSYSEIDNIAILRPKVFKRLPIIVAFNVATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRKKEFGEFLEQQIEKELANVTPGFFKSTLMLVGPAFMNWAEKHLEEPITDLGNLLEDARIVLGVDEFPKEPKDFVKALLSAFVKMNWFKQAKVLIEKDENVLKIVFQATSTSITRMSLAALSVILATRGWKTLNYSTEHATVNMTIQYVGAEDQSILDQLAELSLFQVIGKQFLDVIPVPRDLFNSFALKVYESDRRKFDEIYRATGTRISNAIRMLARNDTEKIRRLAKNFILKNINATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEITTTAFQNLLSFKLKLLEKPILEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPEDYPWTIREVGERITDMYRELGVEVEIEYFEGGFTLKYKSCPYYKLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGRIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAEAGE*
Ga0079639_1001466Ga0079639_10014661F020112MVSKAFRKCVELVEEMLGKGYTLQITSTEVERLIKIGVGADKRTVQKYLRMLTEDLEFLKVSAKNPLGVVIYRIDVEAIERFIGEHLKEKLRQVKLSDIRLKQENMRHVGLEREKVE*
Ga0079639_1001466Ga0079639_10014667F064214MSGKGDLKVLVKSAEGLALALRDTLDVLADHEQRIKRLEEKLGFLADVESRFVEKLVAGGRCE*
Ga0079639_1001807Ga0079639_10018071F079345MLSEALGLELEGLSTLQRKLLLELLHRRHPQYWSKFTSPDCSWQSQKETLEMFLQNHQTELVKELAKAGLEGNGWKTMRRFGKHVQS*
Ga0079639_1002071Ga0079639_10020713F062402MWWVHIGSVIGLIASSLMTVYWFSRLRLAIAEKGWKYTSTLGVLPWVAVLFSSVYVLLGELMVIQKGGTVDNALLYTLAILYWIVLVALVTGIILDAVIRARRAGENLGFVKTENSN*
Ga0079639_1002579Ga0079639_10025791F051554MGMQLRYYVPFKAQEGVNAEYAIKEKLINIEGVAIDTSVNANKWQVPSADLDYIVETLKGAQLRVDHAESALMVVGKVVDAWRDGDRVLFRAEVGDEKLIEKILRGYITHVSIQVDSDEVECSKCKRPSRKEGMLIHLCPGAWEVVHKPKVRELSIVASPAYKTTEFQPVGFFAAMNENQWDAILKHVVGSQLPDSHGNNVGSR
Ga0079639_1002579Ga0079639_10025793F025877MPGLDEGVTVWRYRVQDPDKFEKFRVKEITEGVKITLGKVKNSDRWEIQNYMFDKKRFKTREQVLNWLEKHLKSEVKTLLDFKAWNEARKRFLQVWLEISRISA*
Ga0079639_1004600Ga0079639_10046004F076768MSYWGKVIGKGNYIVAKVNGVKMVLTSAELKWLLDNGYDVEVVG*
Ga0079639_1006524Ga0079639_10065243F103293MGYIPEDLQKLEELPAPYEIYEFVPGVPAYFEVTDYKIGRIAIHPRWPGAPEEKTIVAIRLYVTPKCKPTSPPYYDITPARLVYALAPILASGKWRGYWLRIVRDIPGPKAHFQVSIVTGPEE*
Ga0079639_1008930Ga0079639_10089303F025877MPGLEEGVTVWRYRVQDPDKFDKFRVKELGNGVKITLGRVKGTDRWEIQNYMFDKKRFKDAESVRNWLEKHLKSEIKTLLDFKAWNEERKRFLQVWLEISRISA*
Ga0079639_1014399Ga0079639_10143991F020112VTGVSKAFKKCVELVEEMLSKGYTLQIPSTEVERLIKMGVGADKRTVQKYMRMLTEDLAFLKTVAKNPLGIIIYRIDVEAIEQFVNEHLKEKLRQVKLSDIRLEQENMRQVGT*
Ga0079639_1015742Ga0079639_10157422F079345MLSEALGLNLEGLSTLQRKLLVELLHRRHPQYWSKFASLKCSWQSQKETLKEFLQNHQTELVKELAKAGLEFNDWKTVRRFGKNAENGAL*
Ga0079639_1016328Ga0079639_10163283F076768MSYWGKIIGKGNYIVAKVNGVRMTLTSAELKWFLDNGYDVEVVG*
Ga0079639_1016965Ga0079639_10169652F004454LSRDFRRTVIEVREDLHREIRKLALLNDLRIYQLANAIIEDYLKDGERVKALIKRLRLQFQPLTQH*
Ga0079639_1017000Ga0079639_10170001F078228MAKKFTMSIPEAMYIALEKERQKRKLGTIQELIRFILADYLKEKST*
Ga0079639_1020992Ga0079639_10209922F076768MSYWGKIIGKGNYIVAKVNGVKMVLTSSELRWFLDNGYDVEVVG*
Ga0079639_1023462Ga0079639_10234622F079345MLSEALGLNLEGLSTLQRKLLLELLHRRHPQYWSKITSPKCSWQSQKETLKEFLQNHQTELVKELAKAGLEFNDWKTVRRFRKNAENGAL*
Ga0079639_1039861Ga0079639_10398612F079345MLPEATGLELEGLSTLQRKLLLELLHRRHPQYWSKFTSPKCSWQSRKETLEMFLQNHKIELVKEFAKAGLEGNGWKTMRRFGKHVQS*
Ga0079639_1065051Ga0079639_10650512F079345MLPEATGLELEGLSTLQRKLLLELLHKRHPQYWSKFTSPKCSWQSRKETLEMFLQNHQIELVKELAKAGLEGNGWKTMRRFGKHVQS*
Ga0079639_1075693Ga0079639_10756931F103293DLQKLEELPAPYEIFEFVPGVPAYFEVTDYKIGRIAIHPRWPGAPEEKTIVAIRLYVTPKCKPSYPPYWDITPARLVYALAPILASGKWRGYWLRIVRDIPGPKAHFQVSIVTGPEE*
Ga0079639_1083505Ga0079639_10835052F103293MGYIPEDLQKLEELPAPYEIFEFVPGVPAYFEVTDYKIGRIAIHPRWPGAPEEKTIVAIRLYVTPKCKPTSPPYYDITPARLVYALAPILASGKWRGYWLRIVRDIPGPKAHFQVSIVTGPE*
Ga0079639_1099693Ga0079639_10996931F103293MGYIPEDLQKLEELPAPYEIFEFVPGVPAYFEVTDYKIGRIAIHPRWPGAPEEKTIVAIRLYVTPKCKPTSPPYYDITPARLVYALAPILASGKWRGYWLRIVRDIPGPKAHFQVSIVTGPEE*
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