| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300005736 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114816 | Gp0117154 | Ga0076928 |
| Sample Name | Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T7 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Wisconsin, Madison |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 59195408 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → Viruses → environmental samples → uncultured virus | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 | 1 |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Degradation Of Oil |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → mesocosm → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA | |||||||
| Coordinates | Lat. (o) | 41.4417 | Long. (o) | -70.7744 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004489 | Metagenome / Metatranscriptome | 436 | Y |
| F018190 | Metagenome | 236 | N |
| F033444 | Metagenome / Metatranscriptome | 177 | N |
| F034344 | Metagenome | 175 | N |
| F060822 | Metagenome / Metatranscriptome | 132 | N |
| F064686 | Metagenome / Metatranscriptome | 128 | Y |
| F083372 | Metagenome | 113 | N |
| F097149 | Metagenome / Metatranscriptome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0076928_1001415 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2806 | Open in IMG/M |
| Ga0076928_1025084 | All Organisms → Viruses → environmental samples → uncultured virus | 775 | Open in IMG/M |
| Ga0076928_1040614 | All Organisms → Viruses → Predicted Viral | 1049 | Open in IMG/M |
| Ga0076928_1041080 | All Organisms → Viruses → Predicted Viral | 1019 | Open in IMG/M |
| Ga0076928_1042574 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 | 1896 | Open in IMG/M |
| Ga0076928_1046297 | Not Available | 523 | Open in IMG/M |
| Ga0076928_1068470 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 945 | Open in IMG/M |
| Ga0076928_1079089 | Not Available | 678 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0076928_1001415 | Ga0076928_10014153 | F097149 | MSGWLALTAVTYMLYVMFERGSISSPYKKDIKLSVDDPNLEDKIRKKYFKEN* |
| Ga0076928_1025084 | Ga0076928_10250841 | F004489 | MANPIACIEAINNVRTSVQGNDPRGWMKACAKETLLKMGNEHDFKKCLIHKMESTKQHIEDPQGYA |
| Ga0076928_1040614 | Ga0076928_10406142 | F033444 | MDIKKIFTWLPIALALIGSLYTGINVISKLNNTIEQHTIAISNLEQSLVSIDERYKIEIKNLTQKYTEGREELFREVTFLNTEIAQARAKVEALDNSYYKVNDAVRDLGYDLKDFKREVTGDY* |
| Ga0076928_1041080 | Ga0076928_10410804 | F064686 | MKDKITHDEYQKAWFALHEGIITEEEWRAFCDILFAQTLEENKDVMVRLKNR* |
| Ga0076928_1042574 | Ga0076928_10425747 | F060822 | KKQIDVDCGYNEESANNVYMFHNIKNNIHLFINAYDLEDAMVQFDLCDFAFRKEWRVFLETGQQPS* |
| Ga0076928_1046297 | Ga0076928_10462971 | F018190 | MSKYDKGPETIQETIDRLQDYYNDPNNGINKCFIVQRIKELKQRQLQNNLEKRNFFRIFTR* |
| Ga0076928_1068470 | Ga0076928_10684704 | F034344 | MFVPVKDKLDKLVALTPDDQEKLSYYKSIVPLMIANCHKAHQTIPGYDKCKPEVEAFKWFDGINIPVH |
| Ga0076928_1079089 | Ga0076928_10790893 | F083372 | MIMQQYKISYPRAEFAYARHIRDNLKHEGEIIYPHQPSCRLLEDGTWLLITITGERLGTVSPNGTVRLT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |