NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005482

3300005482: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1900 MetaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300005482 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111640 | Ga0068678
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1900 MetaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size26706898
Sequencing Scaffolds16
Novel Protein Genes18
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola2
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → unclassified Anaerolinea → Anaerolinea sp. 4484_2361

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F002970Metagenome / Metatranscriptome517N
F004307Metagenome / Metatranscriptome444Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F015737Metagenome / Metatranscriptome252N
F061617Metagenome / Metatranscriptome131N
F065815Metagenome / Metatranscriptome127N
F073593Metagenome / Metatranscriptome120N
F073601Metagenome / Metatranscriptome120Y
F081941Metagenome / Metatranscriptome114N
F092122Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0068678_100348Not Available776Open in IMG/M
Ga0068678_100504Not Available3367Open in IMG/M
Ga0068678_104739Not Available2157Open in IMG/M
Ga0068678_107163All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola549Open in IMG/M
Ga0068678_107646Not Available562Open in IMG/M
Ga0068678_108724All Organisms → cellular organisms → Bacteria1683Open in IMG/M
Ga0068678_108789All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola711Open in IMG/M
Ga0068678_108985All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → unclassified Anaerolinea → Anaerolinea sp. 4484_2361243Open in IMG/M
Ga0068678_109996Not Available567Open in IMG/M
Ga0068678_111514Not Available556Open in IMG/M
Ga0068678_112198Not Available771Open in IMG/M
Ga0068678_125744Not Available511Open in IMG/M
Ga0068678_137889Not Available920Open in IMG/M
Ga0068678_144302Not Available555Open in IMG/M
Ga0068678_151749Not Available3635Open in IMG/M
Ga0068678_152330All Organisms → cellular organisms → Bacteria2453Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0068678_100348Ga0068678_1003481F081941SGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTTFTTTQFELSPSLKLILDTIYMMTGSIYLVLAAGVFYMDLEDNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG*
Ga0068678_100504Ga0068678_1005044F002970MSYSTVVDIIEMLAGLNVQYNSATVPALRLTSQASWSDAAQLPMRIIPVLGGLRLVEGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAKLRFAWLQRGDVQLINVSGVVDVIKYGERAYEGVTMTTRFAHLVRSPSI*
Ga0068678_100504Ga0068678_1005045F005302MAHFGVIQGLYAGNFAVEISANGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEVTLTFLYNETTNSASNAIYDHFESPTPMLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0068678_104739Ga0068678_1047391F073601AGCPLLGVSLALGRAMLQAKATCLVMALPAKRREGQRMFWVLHFAWCCAIKIMECGSIIRTLPVEKRALAGMGVLLQQE*
Ga0068678_107163Ga0068678_1071631F005631MKLNVAVDIDNALRKLLPQTARIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIEKLSRTSRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068678_107646Ga0068678_1076461F073601AGCPLLGVSLALGRAMLQAKATCLVMVLPSKRREGQRMFWVLHFAWCCAIKIMECGSIIRPLPVEKKAFVGMGVLLQQE*
Ga0068678_108724Ga0068678_1087243F073601MSLALGRAMLQAKATCLVIMVLPAKRREGQRMFWVLHFAWRCAIVKIVACGSIIRTLLVEKKALAGMGVLLQQG*
Ga0068678_108789Ga0068678_1087891F005631MKLSTSVDIDNALRKLVPQTARIESALDAGAAAAHGVMQIYPPPPAGSRYQRTGNLRQKLRIKKLSRTTRIVENTASYARFVYGMPQARVHRGRWASVVDAAEAARVEAEKVLRGR*
Ga0068678_108985Ga0068678_1089851F073601LQAKATCLVMVLPAKRREGQRMFWRLHFAWRCAIKIMACGRIIRTLPVEKKAFVGMGVLLQQG*
Ga0068678_109996Ga0068678_1099962F073601LQAKATCLVMALPSKRREGQRMFWRLHFAWRCAIKIMACGSIIRTLLVEQKALAGMGVLLQQG*
Ga0068678_111514Ga0068678_1115141F092122MFNKLLRHLGISPKPEEAQGFDNPDGVEVRVTIEIAKEAMKKLIDSTLAAVSNMREMVLSVGLNPLPEVMQKAYEGLRFVIGWLTT
Ga0068678_112198Ga0068678_1121981F002229LLTADGVEEIDYLPSDAEIRTSLDDAGLYGMVVDGVTWIRLSSGVGWWTVLAGRRVAATLAALGWCWVTDDGRGYWSPTLASVASEACAMLGVEVDDGD*
Ga0068678_112198Ga0068678_1121982F002795MATSGLTLRGMVASYREFASRRDGRTYRVITVFGDLVLDGVILCQVDGYDVFVDSPGYTRGEMVELPARLQFVRDSSGRPAVRLYVDEGVR*
Ga0068678_125744Ga0068678_1257441F061617ANRKKVRTRQILNQSNLYYLNNRRLSFLPKIFLGFSIVLVICGLLWYLNVFDLQTVVGQPVSHQSEQLTALDLIRQLNSNTTSQANTTDEQTANWQSLNSDKLVLLTAQNGATCALSLQPNPPENIKPIVQNQPQGWWLPSHCAVSELVAVQIVRLNSTEANKLAQAAN
Ga0068678_137889Ga0068678_1378892F065815PNKPMQPETNNSNPQANQPTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLIGLILGMYWLVSNFVNYLNITFWLK*
Ga0068678_144302Ga0068678_1443021F004307MFKELITHNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEVEDHELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGVPQMTDEQLANAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF*
Ga0068678_151749Ga0068678_1517492F073593LLIFVFVYFFSLSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFATLLINAAINLIVESAFPKIGTSQCPPGQVVRSNIFGDYCINLDINPVIDFAIVVINSLLLPASAIIAALFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLSYTVINLVYSILLIFFK*
Ga0068678_152330Ga0068678_1523304F015737MLLGQLYYYNKLLNSLSFPLTKEQLLHLELAGTSKLELNSLYHLSLNDLIRKLKDLFSYSYGQLLQQESLAFATQFWSNLVSATIPTEKTKLNPKTAFQQTLLNWQEKQFTTELIPEILKEGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPNILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDNEKIETYLHKHLTSNVLITTIEFTKFAQNAFFDSLVRKTLGVRLT*
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