NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005443

3300005443: Wastewater bioreactor microbial communities from Singapore -TA reactor DNA contigs from 4 sample



Overview

Basic Information
IMG/M Taxon OID3300005443 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0056652 | Gp0051941 | Ga0074258
Sample NameWastewater bioreactor microbial communities from Singapore -TA reactor DNA contigs from 4 sample
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size59601001
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin0281
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin2112
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii1
All Organisms → cellular organisms → Bacteria1
Not Available1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin1121
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading
TypeEngineered
TaxonomyEngineered → Bioremediation → Terephthalate → Wastewater → Bioreactor → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationNational University of Singapore, Singapore
CoordinatesLat. (o)1.332Long. (o)103.756Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018007Metagenome / Metatranscriptome237Y
F029922Metagenome / Metatranscriptome187Y
F031111Metagenome / Metatranscriptome183N
F051165Metagenome / Metatranscriptome144Y
F064732Metagenome / Metatranscriptome128Y
F070633Metagenome / Metatranscriptome123N
F088944Metagenome / Metatranscriptome109N
F103319Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0074258_102033All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin0281441Open in IMG/M
Ga0074258_104274All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin2111543Open in IMG/M
Ga0074258_104276All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin2112658Open in IMG/M
Ga0074258_106238All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes2132Open in IMG/M
Ga0074258_106457All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes1523Open in IMG/M
Ga0074258_109609All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii7233Open in IMG/M
Ga0074258_112745All Organisms → cellular organisms → Bacteria1113Open in IMG/M
Ga0074258_116378Not Available808Open in IMG/M
Ga0074258_116961All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112740Open in IMG/M
Ga0074258_126506All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon751Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0074258_102033Ga0074258_1020332F051165MTTSFQKTLTVLASVASVLAGVVTIASYLSGEDVTLPPSSATVPSESRPIIVQARAVFVDDDKVYILDYDNNLIEWNESLDVVVL*
Ga0074258_104274Ga0074258_1042741F031111MKNQVLFSIFKNKTRRKKEKSRFLIGKERCISNIPQNSYYQTIVNIPAAYNVSCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFS*
Ga0074258_104276Ga0074258_1042762F031111MKNQVLFSIFKNKTRRKKEKSSFLIGKKRCISNIPQNSYYQTIVNFPAAYNLSCYYPQNLPSSQIGKQVKEILKPLNLALIKLLKPQISFSKNN*
Ga0074258_106238Ga0074258_1062382F088944MKNEEFEKELFEIYLDSLEDRFDFDEDKEKIESLTTEAGEANIIVEENNIEPIETQVLGTIRQLSHSGKLINYVPIALQENGLYLVMKVSPFIHYALDTDIIAPGYSGQYLIDPYNNFVLYPEEIEDSVVLDYLDLMTIFELQEALEKSIKEKQEGKGIDYSAIQDKWKLEFRFKEYQLTSYFRFRDLDANALDLTPMVDLLVKKEELAMNKYAAARPTLTQAFDLMRQPETSNIFYALTHTLVKEPDGRILLYPDEDYIGKLGKIYICTECVFEGYIPKQLWLGLRGFKDLKSIQEWLNISIKIEGEEKK*
Ga0074258_106457Ga0074258_1064571F031111MKNQVLFSIFKNKTRRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP*
Ga0074258_109609Ga0074258_1096093F064732MEAEAEAATAAARERCTMPLALSAERHVRFLSSPMAPGQYIAATATRSIGQLDHPEDTKLGNHPFLGLL*
Ga0074258_112745Ga0074258_1127452F018007MFNGWKITNILDVDRCELDTADGPYNKTGYRLEHREDGFAITVGLMEYISGWSALEILYWLNEKQAIPRRYDNENRRTKRTQSRAGVSG*
Ga0074258_116378Ga0074258_1163781F029922MEKRQMDLLPMLSREELYGFGIIDISEMIMSIEHAINYAEGYRFLLLCFGNEGSSDKAKMIMKGLEDYLQIVKDVYRFKVDEKKKRENFLKGVNA*
Ga0074258_116961Ga0074258_1169611F103319MADQYNSIGHHPKSTYMTSEGHALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTNQEHTYTGTFTYASFLVTGENVLTQKDVLTLTQLLQDQADEGVSKYFDIYIIEVQGKRTPGTGTTFEEQVEAALQNESMVGYINALVDCKVTKVNRDIPEKNTVVSSREFKYSYMLPR*
Ga0074258_126506Ga0074258_1265061F070633GSDTGLRDRAKNRLVLDVSHSQNEEGFVYSVRQHLPLGPKKCTGRFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKVQLVFDYDKGFMTGVLGGVLYDTFEIPKHEGTDYHG
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