NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005407

3300005407: Mixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16



Overview

Basic Information
IMG/M Taxon OID3300005407 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045767 | Gp0051664 | Ga0074248
Sample NameMixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size72060903
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium2
All Organisms → cellular organisms → Bacteria1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMixed Alcohol Bioreactor Microbial Communities From Texas A&M University
TypeEngineered
TaxonomyEngineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Mixed Alcohol Bioreactor → Mixed Alcohol Bioreactor Microbial Communities From Texas A&M University

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationTexas A and M University College Station, Texas, USA
CoordinatesLat. (o)30.620833Long. (o)-96.341111Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038199Metagenome166Y
F087072Metagenome / Metatranscriptome110Y
F088752Metagenome / Metatranscriptome109N
F091897Metagenome / Metatranscriptome107Y
F093744Metagenome / Metatranscriptome106Y
F101010Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0074248_1018919All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus3419Open in IMG/M
Ga0074248_1020562All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae4494Open in IMG/M
Ga0074248_1033174All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer2243Open in IMG/M
Ga0074248_1063323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae3195Open in IMG/M
Ga0074248_1064981All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1056Open in IMG/M
Ga0074248_1077852All Organisms → cellular organisms → Bacteria2354Open in IMG/M
Ga0074248_1084179Not Available639Open in IMG/M
Ga0074248_1089364All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae2313Open in IMG/M
Ga0074248_1110499All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium534Open in IMG/M
Ga0074248_1111856All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales847Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0074248_1018919Ga0074248_10189197F088752MKGLQSVYDQIINILKENNVLINITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDE*
Ga0074248_1020562Ga0074248_10205624F088752MKELQSVYNQITNILKENNVLINITPPRPYLIKKDDEERINAEAESLLKKGKIKEYNSKMKEKEAYKLYFDEAYKYTNFYEEGDK*
Ga0074248_1033174Ga0074248_10331744F038199MIQYTQAEFLNIIKQYSSTDRSIIKANLKRIMDIYGIKPADIIALGYSSRNVYAWTNKSTNNIPLFGQALNIAVHFDFNITEFLK*
Ga0074248_1063323Ga0074248_10633233F101010MFRIENAYATVWSVEDKGNYVKGRISTSEKNKEGKYVNSNWFVTFVGKAKEPALALSTKDRIKITSGKISNTTTGEGKDKKSYLNVVIFDFENMSNSQTDNQMDDLPF*
Ga0074248_1064981Ga0074248_10649811F087072HLELSEEELGIIAGALYCANSEDIKCFVDKYKYPCAGYNFDEIAELKDRLSEEINKIIEGK*
Ga0074248_1077852Ga0074248_10778524F091897MIGSSINSFPNAQYQCCKCGKYLGDKYLRLKGKKQPDVNIINGKQYCNKCADKHWND*
Ga0074248_1084179Ga0074248_10841792F091897MIGSSIPTFLNIQYQCCKCGKDLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0074248_1089364Ga0074248_10893643F101010MILFNNVYATVWEVEDKGNFVKGRISTSEKNKEGKYVNSYWFVTFVGKAKESALALSTKDRIKITSGKISNTTTGDGKNKKTYTNVTIFEFENVNNNQDNMQNVPF*
Ga0074248_1110499Ga0074248_11104991F087072MKATVFTKRMFSLELSEEELGIIAGALYCVDGSDIKYFVDEYKYPCNGYNFDEINDIKHNLSEQINKLVEGKN*
Ga0074248_1111856Ga0074248_11118562F093744MGFKIGDRVEVNYPVDDFQGHIGIVKKIITDTELIPGKTLVICYWAFLDKEIGFYESSLDLI*
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