NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300005385

3300005385: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_B MetaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300005385 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046783 | Gp0111618 | Ga0068656
Sample NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_B MetaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size8104428
Sequencing Scaffolds4
Novel Protein Genes7
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005746Metatranscriptome391N
F006938Metatranscriptome361N
F009403Metagenome / Metatranscriptome318Y
F015874Metatranscriptome251N
F077351Metatranscriptome117N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0068656_100393Not Available775Open in IMG/M
Ga0068656_100402Not Available776Open in IMG/M
Ga0068656_100499Not Available694Open in IMG/M
Ga0068656_101310Not Available771Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0068656_100393Ga0068656_1003931F077351MSNDRPQYGKPVGRTIRGRVKVTVKAERLEGFWRDVTRQWNRQVLNKVPGSQDLLLTEEEWLTLWRGILATRCHYIDPEREYPRYRFIVPKRCEVPLLMWEALWNFGIYRSKWGADYVITAEAEWPSQEEMSRVYAKWLNALSAYLAVLEMSRSLPSDVDAAPSFVVNVIERGGGVTVQSSYPMEDVTPRHTLWAAIALPPVPDYGPPRTVYMEWDRTLITHEILRGLREEDD*
Ga0068656_100402Ga0068656_1004021F005746MPSTTHTLRLMAAFPLVSHRYRLLLAKAVGRWVHASGFDWTKERVGALVQYLLKLRAGENPCRPPWWSSRYLSYAERVATTASFEKFLQLVQAWRTALTAYGRLKSVPSRKDVEKFEKAVGSARVLTVPLASGRVVEVDTEDWRSRFPFRAHFGVSPRQVLPEVRIHREVFPNNPLSLKLTTGKGYYTPTGEELFRDAWWIMQDHVLHPPGTVPAYWPMFPVLPDFRPEPGRGRGHGAVR
Ga0068656_100499Ga0068656_1004991F015874MTEELGHRLKEEPVGTTIRGRIKVTIQSEKIEAFWKAVTRQWNRLAAAKSPGCEDLLLTEREWLVLWRGLLAARCNYIDPEANYPVYRSLRPRRAEIPSLMWEALYCYGHVATEFGADYIVCATADWPSAEEFAQAYGKWLNALPIYLLVMECARSLPESERACPAFVLNVTERNGSLVVQSNYPLRDVRPRDTLWSVIALPPTPDLAVPKTVYLEWD
Ga0068656_101310Ga0068656_1013104F009403VFRITRRGRGSGRAPALSVVRSADGARLEVREGRYGQGALYAYCDVDDTLAAHTLLLTFADMRARVIYIHDSLPLISECRFFDAFSGVRPDSP
Ga0068656_123528Ga0068656_1235281F006938MLRIRVTIGRQNGLSEAELVSDEPLAPMLGTVKTGHVVDRRAAELVEELFGKEVRDRARNYTRSGATLELLYASLGKYDHGDVAWSALSDDIRARLRDAMNEAYKVFGAKGLTPKPLNEVKIEPSSPGASWRLYGRTGKRTDLDVYVEGLARAETIMDKAKRRKQPFCELPPCLAYLRTQLAPRNSPKVRLVWGFPFEI
Ga0068656_124309Ga0068656_1243091F006938KMDREVIMLRIRVTIGRQNGLSEAEIVSDEPLSPMLGAVKTGHVVDRRAAELVEALFGKEVRDRARNYTRSGATLELLYESLGKYDHGDIAWSALNEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYAEGLARAQNIMEKAMRRKQPYCELAPCLAYLRTQL
Ga0068656_124396Ga0068656_1243961F006938RIRVTIGRQNGLSEAEIVSDEPLSPMLGTVKTGHVVDRRAAELVETLFGKEVRDRARNYTRSGATLELLYESLGRYDHGDVAWSALSEDVRSRLADAMNEAYKVFGVKGLTPKPLNEVRVEPSSPGASWRLYGRTGKRTDLSVYTEGLARAQNIMDKAMRRKQPYCELAPCLAYLRTQL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.