| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300004636 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0111055 | Ga0066622 |
| Sample Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI048_150m_RNA (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 71916986 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 13 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 10 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal inlet → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Saanich Inlet, Vancouver Island, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | N/A | Depth (m) | 150 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002874 | Metagenome / Metatranscriptome | 524 | Y |
| F008692 | Metagenome / Metatranscriptome | 329 | Y |
| F029271 | Metagenome / Metatranscriptome | 189 | N |
| F034189 | Metagenome / Metatranscriptome | 175 | Y |
| F043154 | Metagenome / Metatranscriptome | 157 | Y |
| F049096 | Metagenome / Metatranscriptome | 147 | N |
| F054922 | Metagenome / Metatranscriptome | 139 | N |
| F070152 | Metagenome / Metatranscriptome | 123 | N |
| F078263 | Metagenome / Metatranscriptome | 116 | N |
| F098166 | Metagenome / Metatranscriptome | 104 | N |
| F099485 | Metagenome / Metatranscriptome | 103 | Y |
| F101265 | Metagenome / Metatranscriptome | 102 | N |
| F102126 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0066622_1000582 | Not Available | 646 | Open in IMG/M |
| Ga0066622_1007786 | Not Available | 537 | Open in IMG/M |
| Ga0066622_1012889 | Not Available | 666 | Open in IMG/M |
| Ga0066622_1090183 | Not Available | 657 | Open in IMG/M |
| Ga0066622_1133617 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 510 | Open in IMG/M |
| Ga0066622_1152596 | Not Available | 539 | Open in IMG/M |
| Ga0066622_1158245 | Not Available | 544 | Open in IMG/M |
| Ga0066622_1164511 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua | 597 | Open in IMG/M |
| Ga0066622_1165319 | Not Available | 732 | Open in IMG/M |
| Ga0066622_1167163 | Not Available | 607 | Open in IMG/M |
| Ga0066622_1170190 | Not Available | 695 | Open in IMG/M |
| Ga0066622_1170967 | Not Available | 534 | Open in IMG/M |
| Ga0066622_1174957 | All Organisms → cellular organisms → Archaea | 731 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0066622_1000582 | Ga0066622_10005823 | F008692 | MKTKREIEKETSYMPSSEEEFQADLDAEDMRYHQYCREQQEMYDDDYMNWSGKR* |
| Ga0066622_1007786 | Ga0066622_10077861 | F029271 | PIGVNIMSKLSDLQDIKELLDVDFRKDKFLNNQYNNSPSFNYDAAESYVANIHQFLSEKYGEAVIYNFIQEVESLRITTLKMYIESNIAAYRRFTIKTIDDSNKSYYSILTVKKGI* |
| Ga0066622_1012889 | Ga0066622_10128891 | F098166 | MNILVSKDEEQSIYTTAMRFTLSDGDMLLTATTEEIDRLGEWLGKKGLTGVYTDIEEDDFIECNDFMFTNGDIDINSDNPVTFIRLLK* |
| Ga0066622_1090183 | Ga0066622_10901831 | F043154 | MITKGVAKFVYLDSTEKYNNEDTGKYTLTVGLSNAEAKKLEEAGVKVRSYTDKDTGKEIKIRKFSTQYKLEDNMIQTVSGDSIGTDFGSGSDVEVLWKAGNAHPTHGVATYLTAIKVADDHEPGYKG |
| Ga0066622_1133617 | Ga0066622_11336172 | F070152 | PMHTFGHPCSIDEIKEIAKKHLDKIEGILDGNHNKDYQESILKLARFSLSRSI* |
| Ga0066622_1152596 | Ga0066622_11525962 | F102126 | WMGKKGKDIQLGKDAERFVNDPLYKTAFAETKEELIKMLLQTKISEETERDRIYITIKALGLIDEHIQSVINTGKLAEGQNEFY* |
| Ga0066622_1158245 | Ga0066622_11582452 | F002874 | MEEKIDLSLNRSLPELESSYWEFVEATEGEDSSGWSKSVQEDLSALEGYLMKMDLL* |
| Ga0066622_1164511 | Ga0066622_11645111 | F078263 | NALLFLSIFMEVFVMELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHEESIKKLEERTRDKFAEMTSQNKATEAMVTDKHNDLISKINGISSRVDNLEEKIELAVRELKSEARKTSFLRKLLWLD* |
| Ga0066622_1165319 | Ga0066622_11653192 | F049096 | MRKLITILTLSAFITVGCEMPTEPKRPGEIDSIEMMLKAVNDEDVPITLSKGDDDKKGKGKGKGRGKKPSFRKVIHRLDRYLTNHPNEEVQGYLDTTVLNLAVLRQMKQDGVKDGFKELVKETRQLLRKAIKSVRKARKGD* |
| Ga0066622_1167163 | Ga0066622_11671631 | F054922 | GFVPSPEGIYPCHVVAVNSREYNGNKVFNFQFQVADEVSKLQLPKMVSDGNGWYVAAKDDRGDVVTQPGKPFSGRKFYSKGVWFTPDPMKEERWKNRIYKDFCENLGVIFRTEGDDTILDEVEEADVVGKPCLASVITNEYEKDGETKRTMQVNNVTTWKDGVMLSADELDSDVPF* |
| Ga0066622_1170190 | Ga0066622_11701902 | F034189 | MTTNLAKWASNDGQITKSGLPNDRRAKFLPSVAEIAYNWLRIEGYLGNVRLI* |
| Ga0066622_1170967 | Ga0066622_11709672 | F101265 | GNEISGLKLATDLRLKRNYHCRSTDVGEDYDLRVIFSKSIGGYIVKTSSSEIVETN* |
| Ga0066622_1174957 | Ga0066622_11749573 | F099485 | NWQHSPSKTQVASTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |