| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003977 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114263 | Gp0110091 | Ga0064346 |
| Sample Name | DCM |
| Sequencing Status | Permanent Draft |
| Sequencing Center | 454 Life Sciences |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 286497271 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → cellular organisms → Eukaryota → Haptista | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Chlorophyll Maximum |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Deep Chlorophyll Maximum |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal water body → coastal sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | spain | |||||||
| Coordinates | Lat. (o) | 38.06851 | Long. (o) | -0.23199 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026121 | Metagenome / Metatranscriptome | 199 | Y |
| F030973 | Metagenome / Metatranscriptome | 183 | Y |
| F046986 | Metagenome | 150 | Y |
| F051454 | Metagenome | 144 | Y |
| F097516 | Metagenome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0064346_10004849 | Not Available | 534 | Open in IMG/M |
| Ga0064346_10009886 | Not Available | 537 | Open in IMG/M |
| Ga0064346_10074326 | All Organisms → cellular organisms → Eukaryota → Haptista | 502 | Open in IMG/M |
| Ga0064346_10881233 | Not Available | 520 | Open in IMG/M |
| Ga0064346_10936200 | Not Available | 534 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0064346_10004849 | Ga0064346_100048491 | F046986 | KMSARFNISIRTGHDDYKRAMQLLREEQQGTREELLNQLQALRLATVQRALKRGHYQTVATLLGDMGRVIGEAAPEQLALQVPTLDIRIENENQSQ* |
| Ga0064346_10009886 | Ga0064346_100098862 | F026121 | MMTTEEMLKKEAMRLRMEKLRAKRKPPKLVNVHHTVKALSDDNELSYTNVKKWIKTQEGI |
| Ga0064346_10074326 | Ga0064346_100743261 | F030973 | MYQKRMQGEWNAGMLGSRNYSAVRLSEGRHWKGNLYGTTINDQHQGHRNYDCPHIFSKGPEPKFENMDHAMKHKSVYLGFYGN* |
| Ga0064346_10881233 | Ga0064346_108812331 | F051454 | MIVIESVVNFYINNVGFPTMTINEFRNNHCGRGAVPPPPPLQLRGELDSTGDKGYSFVRDCSTVTGYFIIANESYALAA* |
| Ga0064346_10936200 | Ga0064346_109362001 | F097516 | MVINSQLAPCQQSYRITLDLTVTEDFNPHQIDFRRVFDLSEWESINTHIEEL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |