| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003879 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0113941 | Gp0109644 | Ga0063279 |
| Sample Name | Plastic marine debris microbial communities from the Atlantic Ocean - SEA_0107_20120607_metagen |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Marine Biological Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 253664549 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Plastic Marine Debris Microbial Communities From The Atlantic Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Plastic Marine Debris Microbial Communities From The Atlantic Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → manufactured plastic |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Surface (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 35.55167 | Long. (o) | -65.65833 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002374 | Metagenome / Metatranscriptome | 566 | Y |
| F013306 | Metagenome / Metatranscriptome | 272 | Y |
| F034767 | Metagenome / Metatranscriptome | 174 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0063279_1002680 | Not Available | 7312 | Open in IMG/M |
| Ga0063279_1122105 | Not Available | 738 | Open in IMG/M |
| Ga0063279_1232660 | All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 649 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0063279_1002680 | Ga0063279_100268011 | F034767 | MVFGSKIATATYDILRGVNATVWGGVEGAEKAGKIVKTGISGADVVIGTSHALEDFGCNDVVCGTIDVVGSVSSAVGLVLGNIPVTKHLTFITGSVTVGCRSVRYYCKKYGTFWGCTVAAGQGVKEAIKFTVKQ* |
| Ga0063279_1122105 | Ga0063279_11221051 | F013306 | AVTFGEAPPNGSLHYIQVNIIDREGDVIVDELGETGVPFDPDGPLDAQLGRIDNAGNGAGNGNLNIPGFDFQFSVPSGAAGGQANVNVAHVFNIAGSEVIELADGTPAVRTVVNWVVAAPFVGSALDEQFVTHTVTVTDAKGNTGMATGTFQLTDVVANGQLLTPQP* |
| Ga0063279_1232660 | Ga0063279_12326601 | F002374 | MHQVLLYLSLILASVAFFLCCYACARVGKLLNSVKGLDWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNNELLLHALKEQSSNIHDIKKNNGG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |