Sample 3300003628

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003628

3300003628: Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 78

Overview

Basic Information
IMG/M Taxon OID	3300003628 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0047180 \| Gp0107761 \| Ga0061034
Sample Name	Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 m-RNA DAY 78
Sequencing Status	Permanent Draft
Sequencing Center	University of Sao Paulo, Virginia Bioinformatics Institute
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	10220813
Sequencing Scaffolds	2
Novel Protein Genes	3
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Compost Microbial Communities From Sao Paulo Zoo, Brazil
Type	Engineered
Taxonomy	Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Sao Paulo Zoo, Brazil
Coordinates	Lat. (^o)	-23.651072	Long. (^o)	-46.620675	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026580	Metagenome / Metatranscriptome	197	Y
F055473	Metagenome / Metatranscriptome	138	Y
F059693	Metagenome / Metatranscriptome	133	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
ZC4mRNADay78_117942	Not Available	537	Open in IMG/M
ZC4mRNADay78_122209	Not Available	2270	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
ZC4mRNADay78_117942	ZC4mRNADay78_1179421	F026580	CALPICRSEPGQVVQVGFGLERIAVTQRVSGCYCAPARAQDSGGLKKVCQTKDAERRDKVSLRTGKDTRSRQDP*
ZC4mRNADay78_117942	ZC4mRNADay78_1179422	F055473	VHQANAPSKAAADLVRNGQDAEESRRRVLVWFASRWRNHQLEQAEKPHSKASSRETLAGPATRPKTPLAVENSVG
ZC4mRNADay78_122209	ZC4mRNADay78_1222092	F059693	MTIRRSGLGRRETSGPPVMPCGALDSVGRPRRESGESEPGTSEVRVRAIRLGGRHRSDASRVFPTGRSQDLVVSKGASREEVRSSV*

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