| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003454 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111425 | Gp0104218 | Ga0059320 |
| Sample Name | Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S5-DC05B |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 49265220 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris → Acaryochloris sp. CCMEE 5410 | 1 |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine neritic zone → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Douglas Channel, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 53.6667 | Long. (o) | -129.1333 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000918 | Metagenome / Metatranscriptome | 834 | Y |
| F005243 | Metagenome / Metatranscriptome | 407 | Y |
| F051941 | Metagenome / Metatranscriptome | 143 | N |
| F053659 | Metagenome / Metatranscriptome | 141 | Y |
| F056621 | Metagenome | 137 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| DC05B_1016378 | All Organisms → cellular organisms → Bacteria | 500 | Open in IMG/M |
| DC05B_1037831 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris → Acaryochloris sp. CCMEE 5410 | 541 | Open in IMG/M |
| DC05B_1038898 | Not Available | 556 | Open in IMG/M |
| DC05B_1048548 | Not Available | 583 | Open in IMG/M |
| DC05B_1113783 | Not Available | 578 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| DC05B_1016378 | DC05B_10163781 | F005243 | MSVKQINPELQDKDPQMSKEELAKRREEITAFYKDNIPHLEVQADYEMLLSAIEKARAERMQAQMYMAQQYAAQKEGGQPSTPEADEFKAAMEDAVNPK* |
| DC05B_1037831 | DC05B_10378311 | F053659 | MTSVTEAKRKRQNRTVTMHLGNTLAEYQDMISTEEGVQELIRRVEIADSLNWGCLADGHKEGCPRRLHFTHHDGYTRWVKHFDGMRSLVTILRVRCLNCEAVLTIQPSFIVRYKRYDTDAIEKFATLLFITEDSYRMAGVSQALGLDTRQEGTWIALEETEQA |
| DC05B_1038898 | DC05B_10388982 | F051941 | MATSFKNMPYDINTFEKSVYGVPTDSHSIVNAFYVGNFNNGGLTITVEVKVTTDGTRPYVSNSTNVFSTTLDGGQYLNLLTGPLVLEGGDSLIFTTNTTGRVEGTIAAMQVNREDQETTPTGSV* |
| DC05B_1048548 | DC05B_10485481 | F000918 | MYKSRTQAWNEVMQSFKEDERRTAISQKLFGQDNLIGLTEEQREEYYKAI* |
| DC05B_1113783 | DC05B_11137831 | F056621 | VTEKERFATAERVKKRIQEKHPHFRLIKRRDEIEKKLKVKNENLYAKHEQI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |